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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(CellSPA)
export(calAggExpressionCorrelation)
export(calBaselineAllMetrics)
export(calBaselineCellMetrics)
export(calBaselineCellShapeMetrics)
export(calExpressionCorrelation)
export(calMarkerPct)
export(calMarkerPurity)
export(calNegMarkerVsDist)
export(calSpatialMetricsDiversity)
export(generateMarkerList)
export(generatePolygon)
export(processingRef)
export(processingSPE)
export(readBIDCell)
export(readTiffOutput)
export(readVizgen)
export(readXenium)
export(subset)
import(BiocParallel)
import(SingleCellExperiment)
import(SpatialExperiment)
import(SummarizedExperiment)
importFrom(DropletUtils,read10xCounts)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(Metrics,precision)
importFrom(Metrics,recall)
importFrom(RcppParallel,setThreadOptions)
importFrom(S4Vectors,DataFrame)
importFrom(SingleCellExperiment,counts)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(data.table,fread)
importFrom(methods,as)
importFrom(proxyC,dist)
importFrom(proxyC,simil)
importFrom(reshape2,melt)
importFrom(scater,aggregateAcrossCells)
importFrom(stats,aggregate)
importFrom(stats,cor)
importFrom(stats,sd)
importFrom(tiff,readTIFF)
importFrom(utils,read.csv)