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@taylor-lab Barry Taylor's Lab

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    17 repositories

    • annotateMaf

      Public
      Add functional variant annotation to MAF file
      bioinformaticsrmutationsvariant-annotation
      R
      •
      Other
      •2•11•2•0•Updated Nov 20, 2024Nov 20, 2024

    • neoantigen-dev

      Public
      neoantigen prediction from WES/WGS
      Python
      •1•4•4•1•Updated Nov 14, 2024Nov 14, 2024

    • MSI-NS

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 18, 2022Apr 18, 2022

    • RET

      Public
      Companion code to the paper "The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers"
      R
      •0•0•1•0•Updated Jan 4, 2022Jan 4, 2022

    • facets-preview

      Public
      Load, review and adjust facets fits
      R
      •3•8•15•0•Updated Dec 30, 2021Dec 30, 2021

    • facets-suite

      Public
      Tools for copy-number analysis using FACETS
      R
      •
      Other
      •25•2•3•1•Updated Dec 21, 2021Dec 21, 2021

    • somatic-germline

      Public
      data/scripts associated with somatic-germline manuscript
      Jupyter Notebook
      •5•7•0•0•Updated Nov 4, 2021Nov 4, 2021

    • composite-mutations

      Public
      Companion code to the paper "Phase and context shapes the function of composite oncogenic mutations"
      R
      •2•5•0•0•Updated Aug 25, 2021Aug 25, 2021

    • akt1

      Public
      companion code for article "AKT mutant allele-specific activation dictates pharmacologic sensitivities"
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 17, 2021Jul 17, 2021

    • hotspots

      Public
      Identifying recurrent mutations in cancer
      R
      •
      GNU Affero General Public License v3.0
      •23•37•6•4•Updated Mar 4, 2021Mar 4, 2021

    • hypermutation

      Public
      scripts for general use for lab from Noah's hypermutation project
      R
      •0•0•0•0•Updated Nov 26, 2019Nov 26, 2019

    • BRCA

      Public
      R
      •0•5•0•0•Updated Jul 10, 2019Jul 10, 2019

    • mutationSignatureWaterfallPlots

      Public
      utilities to make waterfall plots of mutation signature data
      Python
      •2•3•0•0•Updated Jun 21, 2019Jun 21, 2019

    • ccs-post-filters

      Public
      Run extra filters on Roslin 2.4.1 mafs, to apply strand bias and mapping quality filters
      R
      •0•1•1•0•Updated Mar 12, 2019Mar 12, 2019

    • wes-sample-selection

      Public
      Sample selection for exome sequencing based on dmp/IMPACT sequencing metrics
      R
      •1•1•0•0•Updated Mar 9, 2019Mar 9, 2019

    • recap-wes-process

      Public
      Processing recaptured exomes starting from Roslin mafs
      R
      •2•0•0•1•Updated Feb 15, 2019Feb 15, 2019

    • GD

      Public
      R
      •
      GNU Affero General Public License v3.0
      •1•3•0•0•Updated Oct 16, 2018Oct 16, 2018