RforMassSpectrometry

All

37 repositories

Chromatograms
Public
Low level infrastructure to handle chromatograms
R
•1•1•8•1•Updated Nov 5, 2024Nov 5, 2024
metabonaut
Public
TeX
•1•0•0•1•Updated Oct 30, 2024Oct 30, 2024
MsIO
Public
Serializing/importing mass spectrometry data objects eventually using language-agnostic formats.
proteomics metabolomics mass-spectrometry
R
•0•2•2•0•Updated Oct 30, 2024Oct 30, 2024
PSMatch
Public
Peptide Spectrum Matching
rstats proteomics mass-spectrometry peptide-spectrum-matches
R
•1•3•3•0•Updated Oct 28, 2024Oct 28, 2024
Spectra
Public
Low level infrastructure to handle MS spectra
rstats bioconductor proteomics metabolomics mass-spectrometry hacktoberfest
R
•25•38•37•0•Updated Oct 25, 2024Oct 25, 2024
ProtGenerics
Public
S4 generic functions for Bioconductor mass spectrometry infrastructure
bioconductor proteomics metabolomics mass-spectrometry r
R
•6•8•1•0•Updated Oct 25, 2024Oct 25, 2024
MsBackendMetaboLights
Public
MsBackend allowing to retrieve MS data from the MetaboLights repository.
metabolomics mass-spectrometry metabolomics-data
R
•0•2•0•0•Updated Oct 21, 2024Oct 21, 2024
MsCoreUtils
Public
Core Utils for Mass Spectrometry Data
utils rstats bioconductor proteomics metabolomics mass-spectrometry
R
•11•16•8•2•Updated Oct 21, 2024Oct 21, 2024
MetaboAnnotation
Public
High level functionality to support and simplify metabolomics data annotation.
annotation metabolomics mass-spectromtry
R
•9•15•17•1•Updated Oct 17, 2024Oct 17, 2024
QFeatures
Public
Quantitative features for mass spectrometry data
rstats bioconductor proteomics metabolomics mass-spectrometry
R
•7•25•31•2•Updated Oct 9, 2024Oct 9, 2024
SpectraQL
Public
Mass Spec Query Language (MassQL) support for Spectra
R
•2•7•8•0•Updated Oct 3, 2024Oct 3, 2024
MetaboCoreUtils
Public
Core utilities for metabolomics.
metabolomics mass-spectrometry
R
•6•9•8•0•Updated Sep 27, 2024Sep 27, 2024
MsBackendMassbank
Public
A prototype backend to parse MassBank records into Spectra
spectra massbank
R
•5•3•7•0•Updated Sep 27, 2024Sep 27, 2024
MsBackendMsp
Public
Mass Spectrometry Data Backend for MSP Files
infrastructure rstats mass-spectrometry
R
•3•5•7•0•Updated Sep 27, 2024Sep 27, 2024
MsBackendMgf
Public
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
R
•2•5•1•0•Updated Sep 27, 2024Sep 27, 2024
CompoundDb
Public
Creating and using (chemical) compound databases
annotation databases rstats metabolomics mass-spectrometry
R
•16•17•28•0•Updated Sep 27, 2024Sep 27, 2024
MsBackendSql
Public
MsBackend adding support to store/access mass spectrometry data in large SQL databases through the Spectra R package.
R
•0•4•2•0•Updated Sep 27, 2024Sep 27, 2024
rformassspectrometry.r-universe.dev
Public
The R for Mass Spectrometry R Universe
0•1•1•0•Updated Sep 5, 2024Sep 5, 2024
RforMassSpectrometry.org
Public
The R for Mass Spectrometry Initiative home page
rstats bioconductor mass-spectrometry
HTML
•4•10•3•0•Updated Sep 2, 2024Sep 2, 2024
stickers
Public
Sticker for RforMassSpectrometry
R
•1•1•0•0•Updated Aug 21, 2024Aug 21, 2024
SpectriPy
Public
Interfacing R's Spectra package with the Python world.
python infrastructure rstats mass-spectrometry
R
•2•8•3•0•Updated Aug 16, 2024Aug 16, 2024
book
Public
R for Mass Spectrometry documentation
documentation proteomics metabolomics mass-spectrometry
TeX
•7•8•4•1•Updated Jun 26, 2024Jun 26, 2024
MsBackendTimsTof
Public
Spectra backend supporting TimsTOF data files using the opentimsr package.
infrastructure rstats mass-spectrometry
R
•5•7•3•1•Updated May 14, 2024May 14, 2024
MsExperiment
Public
Managing and Processing Mass Spectrometry Experiments
R
•4•5•3•0•Updated Apr 16, 2024Apr 16, 2024
MsDataHub
Public
Mass Spectrometry Data on ExperimentHub
data bioconductor proteomics metabolomics mass-spectrometry r r-package
R
•1•1•1•0•Updated Apr 9, 2024Apr 9, 2024
RforMassSpectrometry
Public
The R for Mass Spectrometry meta-package
R
•8•16•4•0•Updated Dec 24, 2023Dec 24, 2023
docs
Public
Former R for Mass Spectrometry book repository
0•0•0•0•Updated Sep 3, 2023Sep 3, 2023
MsFeatures
Public
Functionality for Mass Spectrometry Features.
R
•1•7•3•0•Updated Apr 13, 2023Apr 13, 2023
unimod
Public
Amino acid modifications for mass spectrometry
r proteomics protein mass-spectrometry amino-acid-modifications
R
•0•6•6•0•Updated Feb 5, 2023Feb 5, 2023
Deprecated-MsBackendSql
Public archive
R
•2•4•16•0•Updated Sep 22, 2022Sep 22, 2022