Repositories list

• reading_czi_stack_videos_GH

  Public
  exploring czi visualization

  Jupyter Notebook

  •1•0•2•0•Updated Oct 1, 2020Oct 1, 2020

• montium_5_TFBS_evolution

  Public
  analysis of TFBS data from montium genomes

  HTML

  •0•0•1•0•Updated Dec 30, 2019Dec 30, 2019

• R_dummy_set

  Public
  1•0•0•0•Updated Oct 16, 2019Oct 16, 2019

• motif_extraction

  Public
  This code extracts all nucleotide sequences in regions within an alignment file that have a called TFBS, which was calculated from map_motif_2

  Jupyter Notebook

  •1•0•0•0•Updated Sep 23, 2019Sep 23, 2019

• map_motif2

  Public
  This code is for extracted TFBS from alignment files.

  Python

  •0•1•0•0•Updated Sep 5, 2019Sep 5, 2019

• team_neural_network

  Public
  Neural Network of enhancer regions

  Jupyter Notebook

  •7•13•11•0•Updated Aug 23, 2019Aug 23, 2019

• neutral_sequence_generator

  Public
  Creates a DNA sequence that has motifs distributed at a specified frequency seperated by a neutral sequence that purposefully does not contain the motifs.

  Python

  •1•0•0•0•Updated May 2, 2019May 2, 2019

• TFBS_presence

  Public
  Asking questions about TFBS presence and enhancer function

  Jupyter Notebook

  •2•1•1•0•Updated Apr 1, 2019Apr 1, 2019

• random_pwm_generator

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 19, 2019Mar 19, 2019

• sampleData

  Public
  0•0•0•0•Updated Jan 25, 2019Jan 25, 2019

• MLresources

  Public
  1•0•0•0•Updated Jul 17, 2018Jul 17, 2018

• welcome

  Public
  Jupyter Notebook

  •8•0•0•0•Updated Jul 10, 2018Jul 10, 2018

• making_random_regions

  Public
  3•0•0•1•Updated Jun 11, 2018Jun 11, 2018

• map_motif

  Public
  Map frequency matrices on sequence alignments.

  Jupyter Notebook

  •5•2•9•0•Updated May 22, 2018May 22, 2018

• QC_kvon

  Public
  R

  •0•0•0•0•Updated Mar 9, 2018Mar 9, 2018