From bf8ba6b0cb9b391677628bd486d96f71d4b1335b Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Mon, 26 Jun 2023 10:58:12 +0100
Subject: [PATCH 1/4] Add gha script to test examples
---
.github/workflows/ci.yml | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
create mode 100644 .github/workflows/ci.yml
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..c0eeed1
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,37 @@
+name: Test examples
+
+on:
+ push:
+ branches: [ master, development, experimental ]
+ pull_request:
+ branches: [ master, development, experimental ]
+
+jobs:
+ build:
+
+ runs-on: ${{ matrix.runs-on }}
+ strategy:
+ fail-fast: false
+ matrix:
+ python-version: ["3.7", "3.9", "3.10", "3.11"]
+ runs-on: [ubuntu-latest, windows-latest, macos-latest]
+
+ steps:
+ - uses: actions/checkout@v3
+
+ - name: Set up Python ${{ matrix.python-version }}
+ uses: actions/setup-python@v3
+ with:
+ python-version: ${{ matrix.python-version }}
+
+ - name: Install dependencies
+ run: |
+ python -m pip install --upgrade pip
+
+ - name: Build package
+ run: |
+ pip install .
+
+ - name: Final version info
+ run: |
+ pip list
From 1a19e5006e90972b5f2981ccec316bd3ff2c81e1 Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Mon, 26 Jun 2023 11:00:38 +0100
Subject: [PATCH 2/4] master->main
---
.github/workflows/ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index c0eeed1..4513b15 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -2,9 +2,9 @@ name: Test examples
on:
push:
- branches: [ master, development, experimental ]
+ branches: [ main, development, experimental ]
pull_request:
- branches: [ master, development, experimental ]
+ branches: [ main, development, experimental ]
jobs:
build:
From f589bd00991ff9a91c299963c16251c75e1ec05b Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Mon, 26 Jun 2023 11:11:59 +0100
Subject: [PATCH 3/4] Test example
---
.github/workflows/ci.yml | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 4513b15..159c5ec 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -32,6 +32,12 @@ jobs:
run: |
pip install .
+ - name: Test some examples
+ run: |
+ cd scripts
+ python peptideGPCR_binding.py
+
+
- name: Final version info
run: |
pip list
From cfcc8732c9f8492e6450a224c7c38a91cc029cce Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Mon, 26 Jun 2023 11:20:51 +0100
Subject: [PATCH 4/4] Disable mac + py3.7; requires build of _bz2 module...
---
.github/workflows/ci.yml | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 159c5ec..42373e1 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -32,7 +32,8 @@ jobs:
run: |
pip install .
- - name: Test some examples
+ - name: Test some examples
+ if: ${{ matrix.python-version != '3.7' || matrix.runs-on != 'macos-latest' }} # mac + py3.7 requires build of _bz2 module...
run: |
cd scripts
python peptideGPCR_binding.py