ci.yml

name: Test examples

on:
  push:
    branches: [ main, development, experimental ]
  pull_request:
    branches: [ main, development, experimental ]

jobs:
  build:

    runs-on: ${{ matrix.runs-on }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]
        runs-on: [ubuntu-latest, windows-latest, macos-latest]

    steps:
    - uses: actions/checkout@v4

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip

    - name: Build package
      run: |
        pip install .

    - name: Test some examples      
      run: |
        cd scripts 

        python gene_expression.py
        python peptideGPCR_binding.py
      

    - name: Test more examples   
      if: ${{ matrix.runs-on == 'ubuntu-latest' }} # Note: these example all generate plots - these tests stalled on Mac/Win on GHA
      run: |
        cd scripts 

        python cell_lineage_asymmetry.py
        python signalpropagation_kernels.py
        python plot_signal_propagation.py

        python make_neuropeptidergic_connectome.py 
        ls -alth
        python pep_connectome_extract_combos.py tests/test_pep_pairs.txt 
        more tests/*


    - name: Final version info
      run: |
          pip list