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Minimise output and rename columns #7

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LindaNab opened this issue Dec 12, 2023 · 1 comment
Open

Minimise output and rename columns #7

LindaNab opened this issue Dec 12, 2023 · 1 comment

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@LindaNab
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LindaNab commented Dec 12, 2023

I recently got (very reasonable) pushback from output checkers when using a function very similar to this function for KMs. Leading to minimising output and renaming the columns to make the output better understandable:

  • remove ‘N’ columns
  • rename interval columns (tstart, tend, interval_length)
  • remove standard errors, only include lower and upper CIs
  • remove censoring columns
  • note that column cml.event.r should still be included to understand logic of n.event.r

Maybe:

  • remove columns with risk estimates (as these can be calculated from surv)

Of note, we also have a naming convention recommending that midpoint 6 rounded columns should use the suffix _midpoint6 and columns derived from _midpoint6 should use suffix _midpoint6_derived; which is currently not implemented.

@LindaNab
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You could consider adding this as an extra output file of the function, not replacing the non-minimised output (in case needed for sense checking output).

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