project.yaml

version: "3.0"

expectations:
  population_size: 1000

actions:
  # These actions are copied-and-pasted into README.md for user-facing documentation.
  # If you change them here, then please change them there.
  generate_cohort:
    run: >
      cohortextractor:latest generate_cohort
        --study-definition study_definition
        --index-date-range "2021-01-01 to 2021-06-30 by month"
    outputs:
      highly_sensitive:
        cohort: output/input_2021-*.csv

  generate_measures:
    run: >
      cohortextractor:latest generate_measures
        --study-definition study_definition
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        measure: output/measure_*.csv

  generate_deciles_charts:
    run: >
      python:latest analysis/deciles_charts.py
        --input-files output/measure_*.csv
        --output-dir output
    config:
      show_outer_percentiles: false
      tables:
        output: true
      charts:
        output: true
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        deciles_charts: output/deciles_*_*.*