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As a software code can be also published and have authors as well as other properties and relations, which are typical for a publication, I would propose either to create a new class :SoftwareCode, which is a subClass of bibo:Document or to provide obo:Software with some publication's properties.
The assertions described cannot currently be made in VIVO, so regardless of implementation strategy, existing data, and queries are not affected. A small software change will be needed to display the new assertions properly.
As a software code can be also published and have authors as well as other properties and relations, which are typical for a publication, I would propose either to create a new class :SoftwareCode, which is a subClass of bibo:Document or to provide obo:Software with some publication's properties.
See https://jira.duraspace.org/browse/VIVO-1395
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