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Cannot import knowledge graph from a file when the file contains additional columns.
To Reproduce
Prepare a knowledge graph file formatted_primekg.tsv following the BioMedGPS format, but add additional columns. For example, add a column called "extra" with the value "extra_value" in the first row. Then run the following command:
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Cannot import knowledge graph from a file when the file contains additional columns.
Jul 1, 2024
Describe the bug
Cannot import knowledge graph from a file when the file contains additional columns.
To Reproduce
Prepare a knowledge graph file
formatted_primekg.tsv
following the BioMedGPS format, but add additional columns. For example, add a column called "extra" with the value "extra_value" in the first row. Then run the following command:Expected behavior
The import should fail with an error message indicating that the file is not formatted correctly or just ignore the additional columns.
Additional context
Using biomedgps-cli version 0.3.0
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