GLIBCXX_3.4.30 not found when trying to use timer

[szymczakpau]

Hi,

I'm having major issues with gcc and libstdc++6.

I have setup immundeconv with conda as adviced. However, when I'm trying to run timer, I get:

  /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /home/paulina/miniconda3/envs/deconvolution/lib/R/library/vroom/libs/vroom.so)

Previously I run EPIC and quantiseq and it worked. I experienced a problem with GLIBCXX_3.4.29, I managed to get it to work. Now with 3.4.30 I just can't get it to work (even though all install pass) no matter what, so I'm kinda expecting this to be the fault of my Ubuntu 18. Is there a version of Ubuntu you have tested immundeconv and it worked? Or maybe would it be possible to downgrade vroom somehow?

Not a huge R expert myself, so I'd love some help!

Paulina

[grst]

HI @szymczakpau,

I had a similar problem on the omnideconv CI recently. I solved it by using a more recent version of ubuntu and updating the libstdc++6 package. See here:
https://github.com/omnideconv/omnideconv/pull/125/files#diff-5b0fa7342eba196b56e4e0e540a1c68554760fb2c301ddee2e1a7a5848401364

Downgrading vroom could work, too.