DESCRIPTION

Package: immunedeconv
Title: Methods for immune cell deconvolution
Description: Collection of methods for immune cell deconvolution from bulk RNA-seq samples.
Version: 2.1.0
Authors@R: c(
    person("Lorenzo", "Merotto", role=c("aut", "cre"), email="lorenzo.merotto@uibk.ac.at"),
    person("Gregor", "Sturm", role=c("aut"), email="mail@gregor-sturm.de")
  )
biocViews:
Depends:
    R (>= 4.1),
    EPIC
Imports:
    purrr (>= 1.0.2),
    dplyr (>= 0.7),
    magrittr (>= 1.5),
    readr (>= 1.1),
    readxl (>= 1.0),
    testit (>= 0.7),
    tibble (>= 1.4.2),
    methods (>= 3.4),
    data.tree (>= 0.7),
    limSolve (>= 1.5.5.1),
    e1071 (>= 1.6),
    parallel (>= 3.4),
    rlang,
    BiocParallel,
    preprocessCore,
    Biobase,
    biomaRt,
    sva,
    xCell,
    MCPcounter,
    utils,
    grDevices,
    graphics,
    stats,
    MASS,
    ConsensusTME, 
    ComICS,
    mMCPcounter,
    matrixStats,
    stringr,
    quantiseqr
Suggests:
    testthat,
    knitr,
    rmarkdown,
    pkgdown,
    devtools,
    DiagrammeR,
    tidyr,
    ggplot2,
    webshot,
    covr
Remotes:
    dviraran/xCell,
    GfellerLab/EPIC,
    grst/MCPcounter,
    grst/mMCPcounter,
    cansysbio/ConsensusTME
VignetteBuilder: knitr
License: GPL-2 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
LazyData: true
URL: https:/omnideconv.org/immunedeconv, https://github.com/omnideconv/immunedeconv
BugReports: https://github.com/omnideconv/immunedeconv/issues
RoxygenNote: 7.2.3