New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Integrate imageMarshal #14

Open

joshmoore opened this issue Jul 10, 2020 · 1 comment

Assignees

Member

joshmoore commented Jul 10, 2020

see: https://github.com/IDR/SubmissionWorkflow/pull/7#discussion_r450783384

Rather than curl'ing from OMERO.web (see https://github.com/IDR/SubmissionWorkflow/pull/7), omero-cli-zarr should be able to generate the JSON for imageMarshal directly in Python code.

joshmoore assigned will-moore

Member

sbesson commented Oct 12, 2021

For individual images #76 should take care of the OMERO rendering metadata transformation both with/without the --bf flag.

For plates, the logic should be in place when using the OMERO API and there is an RFE for implementing --bf support (#85).

Except in the latter case, I think the requirement to curl the imageMarshal URL is now dropped.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment