diff --git a/DESCRIPTION b/DESCRIPTION index 31a767b..3991930 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: supportR Type: Package Title: Support Functions for Wrangling and Visualization -Version: 1.1.0.900 +Version: 1.2.0 Authors@R: c( person(given = 'Nicholas J', family = 'Lyon', diff --git a/NEWS.md b/NEWS.md index fa0a3f0..5bf053d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,6 +1,6 @@ -# supportR Version 1.1.0.900 +# supportR Version 1.2.0 -Development version of `supportR`. Changes from preceding version will be listed here as they are made. +Changes from preceding version are listed below - New function: `name_vec`. Creates a named vector of specified contents and names - `github_tree` now supports excluding no directories from the folder tree (this is the default behavior now) diff --git a/R/multi_date_check.R b/R/multi_date_check.R index 570e980..e1d4b34 100644 --- a/R/multi_date_check.R +++ b/R/multi_date_check.R @@ -28,7 +28,7 @@ multi_date_check <- function(data = NULL, col_vec = NULL){ # Add deprecation message - lifecycle::deprecate_warn(when = "1.1.1", what = "multi_date_check()", with = "date_check()") + lifecycle::deprecate_warn(when = "1.2.0", what = "multi_date_check()", with = "date_check()") # Invoke `num_check` instead date_check(data = data, col = col_vec) diff --git a/R/multi_num_check.R b/R/multi_num_check.R index c8c65f8..6722d3b 100644 --- a/R/multi_num_check.R +++ b/R/multi_num_check.R @@ -26,7 +26,7 @@ multi_num_check <- function(data = NULL, col_vec = NULL){ # Add deprecation message - lifecycle::deprecate_warn(when = "1.1.1", what = "multi_num_check()", with = "num_check()") + lifecycle::deprecate_warn(when = "1.2.0", what = "multi_num_check()", with = "num_check()") # Invoke `num_check` instead num_check(data = data, col = col_vec) diff --git a/docs/404.html b/docs/404.html index d32be0c..f177cc1 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index c909492..2099d4e 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 3368cb5..7a50643 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/articles/index.html b/docs/articles/index.html index 262560b..8bfac97 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/articles/supportR.html b/docs/articles/supportR.html index d958339..8b65e5d 100644 --- a/docs/articles/supportR.html +++ b/docs/articles/supportR.html @@ -33,7 +33,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/articles/supportR_files/figure-html/nms_ord-1.png b/docs/articles/supportR_files/figure-html/nms_ord-1.png index 7a6925b..9c65951 100644 Binary files a/docs/articles/supportR_files/figure-html/nms_ord-1.png and b/docs/articles/supportR_files/figure-html/nms_ord-1.png differ diff --git a/docs/authors.html b/docs/authors.html index 2fd795d..a5d444d 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 @@ -60,13 +60,13 @@

Citation

Lyon N (2023). supportR: Support Functions for Wrangling and Visualization. -R package version 1.1.0.900. +R package version 1.2.0. 

@Manual{,
   title = {supportR: Support Functions for Wrangling and Visualization},
   author = {Nicholas J Lyon},
   year = {2023},
-  note = {R package version 1.1.0.900},
+  note = {R package version 1.2.0},
 }
diff --git a/docs/index.html b/docs/index.html index d35fe86..01fe2d3 100644 --- a/docs/index.html +++ b/docs/index.html @@ -35,7 +35,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/news/index.html b/docs/news/index.html index faa13bc..26474b7 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 @@ -45,8 +45,8 @@

Changelog

-

supportR Version 1.1.0.900

-

Development version of supportR. Changes from preceding version will be listed here as they are made.

+

supportR Version 1.2.0

+

Changes from preceding version are listed below

diff --git a/docs/reference/crop_tri.html b/docs/reference/crop_tri.html index 6c76fcd..ed15af1 100644 --- a/docs/reference/crop_tri.html +++ b/docs/reference/crop_tri.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/date_check.html b/docs/reference/date_check.html index 62830ea..6a52c87 100644 --- a/docs/reference/date_check.html +++ b/docs/reference/date_check.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/date_format_guess.html b/docs/reference/date_format_guess.html index 9866cbd..6f72a4a 100644 --- a/docs/reference/date_format_guess.html +++ b/docs/reference/date_format_guess.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/diff_check.html b/docs/reference/diff_check.html index a219c32..608aa8f 100644 --- a/docs/reference/diff_check.html +++ b/docs/reference/diff_check.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/github_ls.html b/docs/reference/github_ls.html index 0ee48f5..ff0636d 100644 --- a/docs/reference/github_ls.html +++ b/docs/reference/github_ls.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/github_ls_single.html b/docs/reference/github_ls_single.html index 8b990d7..5f5d645 100644 --- a/docs/reference/github_ls_single.html +++ b/docs/reference/github_ls_single.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/github_tree.html b/docs/reference/github_tree.html index 443bbca..84af3e6 100644 --- a/docs/reference/github_tree.html +++ b/docs/reference/github_tree.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/index.html b/docs/reference/index.html index 47766b9..84925c5 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/multi_date_check.html b/docs/reference/multi_date_check.html index 8dedcdf..e4f11c7 100644 --- a/docs/reference/multi_date_check.html +++ b/docs/reference/multi_date_check.html @@ -18,7 +18,7 @@ supportR - 1.1.0.900 + 1.2.0 @@ -85,7 +85,7 @@

Examples

# Use `multi_date_check()` to return only the entries that would be lost multi_date_check(data = sites, col_vec = c("first_visit", "second", "third")) -#> Warning: `multi_date_check()` was deprecated in supportR 1.1.1. +#> Warning: `multi_date_check()` was deprecated in supportR 1.2.0. #> ℹ Please use `date_check()` instead. #> For 'first_visit', 3 non-dates identified: '2021-01-0w' | '1990' | '2020-10-xx' #> For 'second', 1 non-dates identified: '1992' diff --git a/docs/reference/multi_num_check.html b/docs/reference/multi_num_check.html index ab7c75f..4196f1a 100644 --- a/docs/reference/multi_num_check.html +++ b/docs/reference/multi_num_check.html @@ -18,7 +18,7 @@ supportR - 1.1.0.900 + 1.2.0 @@ -83,7 +83,7 @@

Examples

# Use `multi_num_check()` to return only the entries that would be lost multi_num_check(data = fish, col_vec = c("count", "num_col2", "third_count")) -#> Warning: `multi_num_check()` was deprecated in supportR 1.1.1. +#> Warning: `multi_num_check()` was deprecated in supportR 1.2.0. #> ℹ Please use `num_check()` instead. #> For 'count', 2 non-numbers identified: '14x' | '_23' #> For 'num_col2', 1 non-numbers identified: 'a' diff --git a/docs/reference/name_vec.html b/docs/reference/name_vec.html index dad4c7d..73f4e7b 100644 --- a/docs/reference/name_vec.html +++ b/docs/reference/name_vec.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/nms_ord-1.png b/docs/reference/nms_ord-1.png index e5de62d..e1d552f 100644 Binary files a/docs/reference/nms_ord-1.png and b/docs/reference/nms_ord-1.png differ diff --git a/docs/reference/nms_ord.html b/docs/reference/nms_ord.html index 1512258..fc461e1 100644 --- a/docs/reference/nms_ord.html +++ b/docs/reference/nms_ord.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 @@ -135,50 +135,47 @@

Examples

#> Run 0 stress 0.1000211 #> Run 1 stress 0.1000211 #> ... New best solution -#> ... Procrustes: rmse 8.697372e-06 max resid 3.735494e-05 +#> ... Procrustes: rmse 7.022709e-06 max resid 3.012908e-05 #> ... Similar to previous best -#> Run 2 stress 0.1000211 -#> ... Procrustes: rmse 7.083036e-06 max resid 3.03159e-05 -#> ... Similar to previous best -#> Run 3 stress 0.1532704 -#> Run 4 stress 0.1715395 -#> Run 5 stress 0.1000211 -#> ... Procrustes: rmse 7.961521e-06 max resid 3.418762e-05 +#> Run 2 stress 0.1715395 +#> Run 3 stress 0.1926906 +#> Run 4 stress 0.1000211 +#> ... New best solution +#> ... Procrustes: rmse 1.447181e-06 max resid 2.490942e-06 #> ... Similar to previous best +#> Run 5 stress 0.2205955 #> Run 6 stress 0.1000211 -#> ... Procrustes: rmse 8.573406e-06 max resid 3.687339e-05 +#> ... Procrustes: rmse 1.048548e-05 max resid 4.308075e-05 #> ... Similar to previous best -#> Run 7 stress 0.1715395 -#> Run 8 stress 0.1613105 +#> Run 7 stress 0.1532704 +#> Run 8 stress 0.1733339 #> Run 9 stress 0.1000211 -#> ... Procrustes: rmse 1.561355e-05 max resid 5.48418e-05 +#> ... Procrustes: rmse 3.171454e-06 max resid 1.342986e-05 #> ... Similar to previous best -#> Run 10 stress 0.1605549 -#> Run 11 stress 0.1000211 -#> ... Procrustes: rmse 8.722737e-06 max resid 3.738351e-05 +#> Run 10 stress 0.1000211 +#> ... Procrustes: rmse 1.223412e-05 max resid 5.225897e-05 #> ... Similar to previous best -#> Run 12 stress 0.1000211 -#> ... Procrustes: rmse 9.844154e-06 max resid 3.209519e-05 +#> Run 11 stress 0.1000211 +#> ... Procrustes: rmse 1.293078e-05 max resid 5.615407e-05 #> ... Similar to previous best +#> Run 12 stress 0.1532705 #> Run 13 stress 0.1000211 -#> ... Procrustes: rmse 1.463742e-05 max resid 6.343162e-05 -#> ... Similar to previous best -#> Run 14 stress 0.1000211 -#> ... Procrustes: rmse 3.062e-06 max resid 1.145287e-05 +#> ... Procrustes: rmse 8.360712e-06 max resid 3.638744e-05 #> ... Similar to previous best -#> Run 15 stress 0.1613667 -#> Run 16 stress 0.1715395 -#> Run 17 stress 0.1000211 -#> ... Procrustes: rmse 2.76173e-05 max resid 7.920528e-05 +#> Run 14 stress 0.1715395 +#> Run 15 stress 0.2106241 +#> Run 16 stress 0.1000211 +#> ... Procrustes: rmse 1.096114e-06 max resid 4.630537e-06 #> ... Similar to previous best -#> Run 18 stress 0.1733339 +#> Run 17 stress 0.1532704 +#> Run 18 stress 0.1532704 #> Run 19 stress 0.1000211 -#> ... Procrustes: rmse 7.97779e-06 max resid 3.421011e-05 +#> ... Procrustes: rmse 1.450119e-06 max resid 6.276129e-06 #> ... Similar to previous best #> Run 20 stress 0.1000211 -#> ... Procrustes: rmse 6.745311e-06 max resid 2.886577e-05 +#> ... Procrustes: rmse 4.2024e-06 max resid 1.7955e-05 #> ... Similar to previous best -#> *** Best solution repeated 12 times +#> *** Best solution repeated 9 times # With the scaled object and original dataframe we can use this function nms_ord(mod = mds, groupcol = data$factor_4lvl, diff --git a/docs/reference/num_check.html b/docs/reference/num_check.html index 2738d53..776693a 100644 --- a/docs/reference/num_check.html +++ b/docs/reference/num_check.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/pcoa_ord.html b/docs/reference/pcoa_ord.html index 78d5414..c6a860f 100644 --- a/docs/reference/pcoa_ord.html +++ b/docs/reference/pcoa_ord.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/rmd_export.html b/docs/reference/rmd_export.html index 1f13708..eaa518f 100644 --- a/docs/reference/rmd_export.html +++ b/docs/reference/rmd_export.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/summary_table.html b/docs/reference/summary_table.html index a0fefba..cfdc7da 100644 --- a/docs/reference/summary_table.html +++ b/docs/reference/summary_table.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/supportR-package.html b/docs/reference/supportR-package.html index 83640a5..bb806e7 100644 --- a/docs/reference/supportR-package.html +++ b/docs/reference/supportR-package.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0 diff --git a/docs/reference/theme_lyon.html b/docs/reference/theme_lyon.html index 56a0b11..84ff474 100644 --- a/docs/reference/theme_lyon.html +++ b/docs/reference/theme_lyon.html @@ -17,7 +17,7 @@ supportR - 1.1.0.900 + 1.2.0