Mouse tumor sample

[wangyi837]

Dear Developer,

I am wondering if there is anyway to use msisensor2 to detect MSI in the whole-exome sequencing data with mouse tumor samples? Do you know if there is any other program that can do it in the mouse? Your help is greatly appreciated!

Best,
Yi

[ZhaoDanOnGitHub]

您好，您的邮件已收到！

[Beifang]

MSIsensor2 is trained on multi-tumor sample data from TCGA. Unfortunately, we don't have mouse data. If you could provide mouse data, we could help with the training.