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WGS best practices #21

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yajass opened this issue Aug 22, 2021 · 2 comments
Open

WGS best practices #21

yajass opened this issue Aug 22, 2021 · 2 comments

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@yajass
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yajass commented Aug 22, 2021 •
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Thanks for creating this tool. I'm running paired tumor-normal WGS samples. Using msisensor2 scan returns ~30 million sites when running with default settings. This seems excessive and msisensor2 msi takes very long to run. Do you recommend more appropriate parameters for msisensor scan when using WGS data?
@Beifang
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Beifang commented Aug 31, 2021

-b threads number for parallel computing, default=1

You can try this share memory parallel option. ( OpenMP based multi-threads parallel)

@bounlu
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bounlu commented Nov 7, 2023

If not compiled with openMP, does -b have any effect?

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@Beifang @bounlu @yajass