1.1.7

1.1.7 (December 17, 2018)

Full changelog

• FIX: Copy node list before generating a flat graph (#2828)
• FIX: Update pytest req'd version to 3.6 (#2827)
• FIX: Set ResourceMonitor.fname to an absolute path (#2824)
• FIX: Order of SPM.NewSegment channel_info boolean tuple is (Field, Corrected) (#2817)
• FIX: Indices were swapped for memory and cpu profile data (#2816)
• FIX: status_callback not called with stop_on_first_crash (#2810)
• FIX: Change undefined ScriptError on LFS plugin to IOError (#2803)
• ENH: Add NaN failure mode to CompCor interfaces (#2819)
• ENH: Enable cnr_maps and residuals outputs for FSL eddy (#2750)
• ENH: Improve str2bool + doctests (#2807)
• TST: Improve py.test configuration of doctests (#2802)
• DOC: Update DOI badge to point to all versions (#2804)
• MAINT: Offload interfaces with help formatting (#2797)
• MAINT: Reduce minimal code redundancy in filemanip.get_dependencies (#2782)
• MAINT: Delayed imports to reduce import time (#2809)

1.1.6

1.1.6 (November 26, 2018)

Full changelog

• [FIX] MapNodes fail when MultiProcPlugin passed by instance (#2786)
• [FIX] --fineTune arguments order for MeshFix command (#2780)
• [ENH] Add mp_context plugin arg for MultiProc (#2778)
• [ENH] Create a crashfile even if 'stop_on_first_crash' is set (#2774)
• [ENH] Add ExtractedBrainN4 output to ANTs CorticalThickness interface (#2784)
• [STY] Combine split import (#2801)
• [DOC] use https in css stylesheet url (#2779)
• [MAINT] Outsource get_filecopy_info() from interfaces (#2798)
• [MAINT] Import only Sequence to avoid DeprecationWarning (#2793)
• [MAINT] One less DeprecationWarning (configparser) (#2794)
• [MAINT] DeprecationWarning: use HasTraits.trait_set instead (#2792)
• [MAINT] Stop using deprecated logger.warn() (#2788)
• [MAINT] Move interfaces.base.run_command to nipype.utils.subprocess (#2777)
• [MAINT] Force numpy>=1.15.4 when Python>=3.7 (#2775)

1.1.5

1.1.5 (November 08, 2018)

Hotfix release.

Full changelog

• ENH: Allow timeouts during SLURM job status checks (#2767)
• RF: Subclass non-daemon variants of all multiprocessing contexts (#2771)

1.1.4

1.1.4 (October 31, 2018)

Full changelog

• FIX: Python 2.7-3.7.1 compatible NonDaemonPool (#2754)
• FIX: VRML typo (VMRL) in MeshFix (#2757)
• FIX: Refine FSL.split output identification (#2746)
• FIX: Reuse _gen_filename logic in ants.LaplacianThickness (#2734)
• FIX: Remove 'reg_term' default from dwi2tensor interface (#2731)
• FIX: Keep profile files when remove_unnecessary_outputs = true (#2718)
• ENH: Add afni.LocalStat and afni.ReHo, update afni.ROIStats inputs (#2740)
• ENH: Add compression option for bru2nii (#2762)
• ENH: Add slice_encoding_direction input to TShift (#2753)
• ENH: Add 'sse' output to FSL DTIFit interface (#2749)
• ENH: Update ants.LaplacianThickness to use name_source (#2747)
• ENH: Add tab completion for node and interface inputs properties (#2735)
• ENH: enable/disable resource monitor in the fixture per test (#2725)
• TEST: Update expected dotfile text for networkx 1.x (#2730)
• DOC: Move user docs from nipype to nipype_tutorial (#2726)
• DOC: Use consistent name in reconall workflow docstring (#2758)
• MAINT: Use neurodocker 0.4.1 + apt install afni (#2707)
• MAINT: Fix prov and rdflib in nipype (#2701)
• MAINT: Correct readthedocs build error (#2723)
• MAINT: Pin codecov to <5.0 so Travis is fixed (#2728)
• CI: Lock travis pybids 0.6.5 (#2720)

1.1.3

1.1.3 (September 24, 2018)

Full changelog

• FIX: Return afni.Qwarp outputs as absolute paths (#2705)
• FIX: Add informative error for interfaces that fail to return valid runtime object (#2692)
• FIX: Construct MCFLIRT output paths relative to out_file (#2703)
• FIX: SLURM plugin polling (#2693)
• FIX: Handle missing substring in SPM docs (#2691)
• ENH: Add colorFA output to DIPY DTI interface (#2695)
• RF: Use runtime.cwd in Rename (#2688)
• DOC: Fix naming of motion parameters (roll/yaw swapped) (#2696)
• DOC: Update links to user and developer help forums (#2686)
• CI: Test 3.7, resume testing nipy extras (#2682)

1.1.2

1.1.2 (August 11, 2018)

Hot-fix release, resolving incorrect dependencies in 1.1.1 wheel.

Full changelog

• FIX: Read BIDS config.json under grabbids or layout (#2679)
• FIX: Node __repr__ and detailed graph expansion (#2669)
• FIX: Prevent double-collapsing of nested lists by OutputMultiObject (#2673)
• ENH: Add interface to SPM realign_unwarp (#2635)
• MAINT: Fix wheel build to ensure futures is only required in Python 2 (#2678)
• MAINT: ensure interface _cmd only includes executable (#2674)
• MAINT: Issue template: Pretty print platform details (#2671)
• CI: removing travis_retry for pip install pytest xdist 1.22.5 (#2664)

1.1.1

1.1.1 (July 30, 2018)

Full changelog

• FIX: Un-set incorrect default options in TOPUP (#2637)
• FIX: Copy FSCommand.version to ReconAll.version (#2656)
• FIX: Various BIDSDataGrabber fixes (#2651)
• FIX: changing Node._output_dir to realpath (#2639)
• FIX: Typo in DWIExtract of Mrtrix3interface (#2634)
• FIX: Typo in FSLXCommandInputSpec (#2628)
• ENH: Allow transform to be saved from AFNI 3dWarp (#2642)
• ENH: Allow BIDS-style slice timings to be passed directly to TShift (#2608)
• ENH: S3 access using instance role (#2621)
• ENH Minor improvements to PR template (#2636)
• TEST: make specs (#2653)
• DOC: update neurodocker tutorial for neurodocker version 0.4.0 (#2647)
• MAINT: Remove vestiges of nose testing library (#2662)
• MAINT: Make pytest-xdist a dependency (#2649)
• CI: Install pytest>=3.4 in Travis (#2659)

1.1.0

1.1.0 (July 04, 2018)

Full changelog

• RF: Futures-based MultiProc (#2598)
• FIX: Avoid closing file descriptors on Windows (#2617)
• MAINT: Play nice with external logging (#2611)
• MAINT: Remove ignore_exception and terminal_output traits from input specs (#2618)
• MAINT: Converge autotest names (#2610)
• ENH: Add versioning metadata to crash files (#2626)
• ENH add -dsort option to TProject (#2623)
• ENH: Add Rescale interface (#2599)
• DOC: Improve documentation for ANTs/FSL interfaces (#2593)
• CI: Stop using Miniconda on Travis (#2600)
• CI: Add PyPI validation on rel/* branches (#2603)

1.0.4

1.0.4 (May 29, 2018)

Full changelog

• FIX: Update logging levels in enable_debug_mode (#2595)
• FIX: Set default result in DistributedPluginBase._clean_queue (#2596)
• FIX: Correctly connect JoinNodes in nested iterables (#2597)
• FIX: DTITK nonlinear workflow origin reslicing (#2561)
• FIX: ResponseSD support for multiple b-vals (#2582)
• FIX: Workaround to ICA-AROMA change of directory (#2566)
• FIX/TEST: Gunzip cleanup and test (#2564)
• FIX: Print UID in crashfile if login name is unavailable (#2563)
• ENH: initial connectome workbench support (#2594)
• ENH: AFNI (3d)LocalBistat interface (#2590)
• ENH: Reorient interface (#2572)
• ENH: FSL slice interface (#2585)
• ENH: LabelGeometryMeasures interface (#2586)
• ENH: MRTrix3 dwidenoise interface (#2568)
• ENH: ReportCapableInterface mix-in/base interface (#2560)
• CI: Move PyPI deployment to Circle (#2587)
• CI: Submit Travis results to codecov (#2574)

Nipype 1.0.3

1.0.3 (April 30, 2018)

Full changelog

• FIX: Propagate explicit Workflow config to Nodes (#2559)
• FIX: Return non-enhanced volumes from dwi_flirt (#2547)
• FIX: Skip filename generation when required fields are missing (#2549)
• FIX: Fix Afni's Allineate hashing and out_file (#2502)
• FIX: Replace deprecated HasTraits.get with trait_get (#2534)
• FIX: Typo in "antsRegistrationSyNQuick.sh" (#2544)
• FIX: DTITK Interface (#2514)
• FIX: Add -mas argument to fsl.utils.ImageMaths (#2529)
• FIX: Build cmdline from working directory (#2521)
• FIX: FSL orthogonalization bug (#2523)
• FIX: Re-enable dcm2niix source_names (#2550)
• ENH: Add an activation count map interface (#2522)
• ENH: Revise the implementation of FuzzyOverlap (#2530)
• ENH: Add MultiObject, ensure/simplify_list; alias old names for 1.x compatibility (#2517)
• ENH: Add LibraryBaseInterface (#2538)
• ENH: Define default output file template for afni.CatMatvec (#2527)
• MAINT: Deprecate terminal_output and ignore_exception from CommandLine (#2552)
• MAINT: Set traits default values properly (#2533)
• MAINT: use RawConfigParser (#2542)
• MAINT: Minor autotest cleanups (#2519)
• CI: Add retry script for Docker commands (#2516)