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[ENH] Interface for MRTrix's tcksift #3665

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GalKepler opened this issue Aug 12, 2024 · 0 comments
Open

[ENH] Interface for MRTrix's tcksift #3665

GalKepler opened this issue Aug 12, 2024 · 0 comments

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@GalKepler
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Summary

It should be beneficial to have an interface for MRTrix's tcksift as part of the overall effort to include as many as possible of the tools being used in the neuroimaging society.

Expected behavior

Being able to use a dedicated interface for tcksift, that would, at it's most simplified case, look like this:

from nipype.interfaces import mrtrix3 as mrt
tcksift = mrt.TckSift()
tcksift.inputs.in_file = "/path/to/streamlines.tck"
tcksift.inputs.in_fod = "/path/to/fod.mif"
tcksift.inputs.out_file = "/path/to/sifted_streamlines.tck"

tcksift.cmdline
tcksift /path/to/streamlines.tck /path/to/fod.mif /path/to/sifted_streamlines.tck
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