From 2808a2f0517da87024ab5f1725a9b62a904146d4 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 3 Jun 2020 10:24:39 -0400 Subject: [PATCH 1/4] Update changelog --- .zenodo.json | 10 +++++----- doc/changelog/1.X.X-changelog.rst | 18 +++++++++++++++++- 2 files changed, 22 insertions(+), 6 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 8a57735308..c7af81ad78 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -635,6 +635,11 @@ "affiliation": "Vrije Universiteit Amsterdam", "name": "Ort, Eduard" }, + { + "affiliation": "CNRS, UMS3552 IRMaGe", + "name": "Condamine, Eric", + "orcid": "0000-0002-9533-3769" + }, { "affiliation": "Stanford University", "name": "Lerma-Usabiaga, Garikoitz", @@ -719,11 +724,6 @@ { "name": "Shachnev, Dmitry" }, - { - "affiliation": "CNRS, UMS3552 IRMaGe", - "name": "Condamine, Eric", - "orcid": "0000-0002-9533-3769" - }, { "name": "Flandin, Guillaume" }, diff --git a/doc/changelog/1.X.X-changelog.rst b/doc/changelog/1.X.X-changelog.rst index 239aa7d936..e10949cf08 100644 --- a/doc/changelog/1.X.X-changelog.rst +++ b/doc/changelog/1.X.X-changelog.rst @@ -1,4 +1,4 @@ -1.5.0 (To be determined) +1.5.0 (June 03, 2020) ========================= New feature release in the 1.5.x series. @@ -8,20 +8,36 @@ In this release, the example scripts have been split out into their own package: (`Full changelog `__) + * FIX: volterra_expansion_order documentation error (https://github.com/nipy/nipype/pull/3213) + * FIX: BET incorrect output paths (https://github.com/nipy/nipype/pull/3214) + * FIX: Terminal output in ``report.rst`` spreads one line per character (https://github.com/nipy/nipype/pull/3220) + * FIX: Allow parsing freesurfer 7 version string (https://github.com/nipy/nipype/pull/3216) + * FIX: Use PackageInfo to get NiftyReg version (https://github.com/nipy/nipype/pull/3194) * FIX: Partial rollback of N4BiasFieldCorrection (https://github.com/nipy/nipype/pull/3188) * FIX: ANTs' tools maintenance overhaul (https://github.com/nipy/nipype/pull/3180) * FIX: load_resultfile crashes if open resultsfile from crashed job (https://github.com/nipy/nipype/pull/3182) * FIX: FSL model.py make multiple F-tests (https://github.com/nipy/nipype/pull/3166) + * ENH: Restore ants.legacy interfaces (https://github.com/nipy/nipype/pull/3222) + * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (https://github.com/nipy/nipype/pull/3210) + * ENH: SPM NewSegment multi-channel segmentation (https://github.com/nipy/nipype/pull/3162) + * ENH: Add reverse-ordered transform lists to ants.Registration outputs (https://github.com/nipy/nipype/pull/3192) * ENH: Improve workflow connect performance (https://github.com/nipy/nipype/pull/3184) * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (https://github.com/nipy/nipype/pull/3176) * ENH: Detect values for EulerNumber interface (https://github.com/nipy/nipype/pull/3173) * ENH: Remove examples from repository (https://github.com/nipy/nipype/pull/3172) + * TEST: Clean up tests (https://github.com/nipy/nipype/pull/3195) + * TEST: Mock terminal output before testing changing default value (https://github.com/nipy/nipype/pull/3193) + * REF: make invocations of python and pytest consistent with the one used/desired python (https://github.com/nipy/nipype/pull/3208) * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (https://github.com/nipy/nipype/pull/3177) * REF: Removed all uses of numpy_mmap (https://github.com/nipy/nipype/pull/3121) + * DOC: Sphinx 3 compatibility (https://github.com/nipy/nipype/pull/3206) * DOC: Update links, typos in contributing guide (https://github.com/nipy/nipype/pull/3160) * DOC: Update SelectFiles docstring to match actual behavior (https://github.com/nipy/nipype/pull/3041) * DOC: Updated .zenodo.json file (https://github.com/nipy/nipype/pull/3167) * DOC: Update .zenodo.json (https://github.com/nipy/nipype/pull/3165) + * MNT: Permit recent nilearns (https://github.com/nipy/nipype/pull/2841) + * MNT: Test Python 3.8 (https://github.com/nipy/nipype/pull/3154) + * MNT: Restore ReadTheDocs (https://github.com/nipy/nipype/pull/3207) * MNT: Update Zenodo ordering based on commit count (https://github.com/nipy/nipype/pull/3169) 1.4.2 (February 14, 2020) From f4c936a2bc3d4a57c568fdf26802e08424a966a6 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 3 Jun 2020 10:24:45 -0400 Subject: [PATCH 2/4] Update mailmap --- .mailmap | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.mailmap b/.mailmap index 4df0aff6e5..f603849d24 100644 --- a/.mailmap +++ b/.mailmap @@ -45,6 +45,8 @@ Colin Buchanan Daniel Brenner Daniel Clark Daniel Geisler +Daniel Geisler +Daniel Geisler <3453485+daniel-ge@users.noreply.github.com> Daniel Ginsburg Daniel McNamee David Ellis @@ -89,6 +91,7 @@ Joerg Stadler John A. Lee John A. Lee Joke Durnez +Jordi Huguet Josh Warner Junhao WEN Kai Schlamp @@ -117,6 +120,7 @@ Lukas Snoek Marcel Falkiewicz Martin Perez-Guevara Mathias Goncalves +Mathias Goncalves Mathieu Dubois Mathieu Dubois Matteo Mancini @@ -170,6 +174,7 @@ Steven Giavasis Steven Giavasis Steven Giavasis Steven Tilley +Sulantha Mathotaarachchi Tristan Glatard Victor Férat Victor Férat From fe34db606479c5774e462e6a46ddadfdf8fbd5ef Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 3 Jun 2020 10:24:58 -0400 Subject: [PATCH 3/4] Update Zenodo --- .zenodo.json | 44 ++++++++++++++++++++++++++------------------ 1 file changed, 26 insertions(+), 18 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index c7af81ad78..2ee43c9904 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -76,14 +76,14 @@ "name": "Dayan, Michael", "orcid": "0000-0002-2666-0969" }, - { - "name": "Loney, Fred" - }, { "affiliation": "Dartmouth College: Hanover, NH, United States", "name": "Halchenko, Yaroslav O.", "orcid": "0000-0003-3456-2493" }, + { + "name": "Loney, Fred" + }, { "affiliation": "Florida International University", "name": "Salo, Taylor", @@ -288,6 +288,11 @@ "name": "Kong, Xiang-Zhen", "orcid": "0000-0002-0805-1350" }, + { + "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany", + "name": "Geisler, Daniel", + "orcid": "0000-0003-2076-5329" + }, { "name": "Salvatore, John" }, @@ -384,6 +389,11 @@ { "name": "Cumba, Chad" }, + { + "affiliation": "University College London", + "name": "P\u00e9rez-Garc\u00eda, Fernando", + "orcid": "0000-0001-9090-3024" + }, { "name": "Blair, Ross" }, @@ -392,16 +402,6 @@ "name": "Iqbal, Shariq", "orcid": "0000-0003-2766-8425" }, - { - "affiliation": "NIMH, Scientific and Statistical Computing Core", - "name": "Glen, Daniel", - "orcid": "0000-0001-8456-5647" - }, - { - "affiliation": "Technische Universit\u00e4t Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry", - "name": "Geisler, Daniel", - "orcid": "0000-0003-2076-5329" - }, { "affiliation": "University of Iowa", "name": "Welch, David" @@ -429,11 +429,6 @@ "name": "Papadopoulos Orfanos, Dimitri", "orcid": "0000-0002-1242-8990" }, - { - "affiliation": "University College London", - "name": "P\u00e9rez-Garc\u00eda, Fernando", - "orcid": "0000-0001-9090-3024" - }, { "affiliation": "Leibniz Institute for Neurobiology", "name": "Stadler, J\u00f6rg", @@ -618,6 +613,10 @@ "name": "Gerhard, Stephan", "orcid": "0000-0003-4454-6171" }, + { + "affiliation": "Enigma Biomedical Group", + "name": "Mathotaarachchi, Sulantha" + }, { "name": "Saase, Victor" }, @@ -659,6 +658,11 @@ "name": "Pellman, John", "orcid": "0000-0001-6810-4461" }, + { + "affiliation": "BarcelonaBeta Brain Research Center", + "name": "Huguet, Jordi", + "orcid": "0000-0001-8420-4833" + }, { "affiliation": "University of Pennsylvania", "name": "Junhao WEN", @@ -689,6 +693,10 @@ "name": "Andberg, Sami Kristian", "orcid": "0000-0002-5650-3964" }, + { + "affiliation": "Sagol School of Neuroscience, Tel Aviv University", + "name": "Baratz, Zvi" + }, { "name": "Matsubara, K" }, From 94f25c1f627a3e600fbe34b622f848528c700c28 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 3 Jun 2020 10:25:48 -0400 Subject: [PATCH 4/4] REL: 1.5.0 --- nipype/info.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nipype/info.py b/nipype/info.py index 0e7fd0f70b..69eb443f76 100644 --- a/nipype/info.py +++ b/nipype/info.py @@ -5,7 +5,7 @@ # nipype version information # Remove -dev for release -__version__ = "1.5.0-rc1.post-dev" +__version__ = "1.5.0" def get_nipype_gitversion():