tests.yml

name: Stable tests

# This file tests the claimed support range of nipype including
#
# * Operating systems: Linux, OSX
# * Dependencies: minimum requirements, optional requirements
# * Installation methods: setup.py, sdist, wheel, archive

on:
  push:
    branches:
      - master
      - maint/*
    tags:
      - "*"
  pull_request:
    branches:
      - master
      - maint/*
  schedule:
    # 8am EST / 9am EDT Mondays
    - cron: "0 13 * * 1"

defaults:
  run:
    shell: bash

concurrency:
  group: tests-${{ github.ref }}
  cancel-in-progress: true

permissions: {}
jobs:
  build:
    permissions:
      contents: read # to fetch code (actions/checkout)

    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - uses: actions/setup-python@v5
        with:
          python-version: 3
      - run: pip install --upgrade build twine
      - name: Build sdist and wheel
        run: python -m build
      - run: twine check dist/*
      - uses: actions/upload-artifact@v4
        with:
          name: dist
          path: dist/

  test-package:
    runs-on: ubuntu-latest
    needs: [build]
    strategy:
      matrix:
        package: ["wheel", "sdist"]
    steps:
      - uses: actions/download-artifact@v4
        with:
          name: dist
          path: dist/
      - uses: actions/setup-python@v5
        with:
          python-version: 3
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"
      - name: Update pip
        run: pip install --upgrade pip
      - name: Install wheel
        run: pip install dist/nipype-*.whl
        if: matrix.package == 'wheel'
      - name: Install sdist
        run: pip install dist/nipype-*.tar.gz
        if: matrix.package == 'sdist'
      - run: python -c 'import nipype; print(nipype.__version__)'
      - name: Install test extras
        run: pip install nipype[tests]
      - name: Run tests
        run: TMPDIR=$(mktemp -t -d 't m p.XXXXXXXXXX') pytest --doctest-modules -v --pyargs nipype

  stable:
    # Check each OS, all supported Python, minimum versions and latest releases
    permissions:
      contents: read # to fetch code (actions/checkout)

    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: ["ubuntu-22.04"]
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
        check: ["test"]
        pip-flags: [""]
        depends: ["REQUIREMENTS"]
        deb-depends: [false]
        nipype-extras: ["doc,tests,profiler"]
        include:
          - os: ubuntu-22.04
            python-version: "3.8"
            check: test
            pip-flags: ""
            depends: REQUIREMENTS
            deb-depends: true
            nipype-extras: doc,tests,profiler,duecredit,ssh
          - os: ubuntu-20.04
            python-version: 3.8
            check: test
            pip-flags: ""
            depends: REQUIREMENTS
            deb-depends: true
            nipype-extras: doc,tests,nipy,profiler,duecredit,ssh
    env:
      DEPENDS: ${{ matrix.depends }}
      CHECK_TYPE: ${{ matrix.check }}
      EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }}
      INSTALL_DEB_DEPENDENCIES: ${{ matrix.deb-depends }}
      NIPYPE_EXTRAS: ${{ matrix.nipype-extras }}
      INSTALL_TYPE: pip
      CI_SKIP_TEST: 1

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"
      - name: Create virtual environment
        run: tools/ci/create_venv.sh
      - name: Build archive
        run: |
          source tools/ci/build_archive.sh
          echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV
      - name: Install Debian dependencies
        run: tools/ci/install_deb_dependencies.sh
        if: ${{ matrix.os == 'ubuntu-latest' }}
      - name: Install dependencies
        run: tools/ci/install_dependencies.sh
      - name: Install Nipype
        run: tools/ci/install.sh
      - name: Run tests
        run: tools/ci/check.sh
        if: ${{ matrix.check != 'skiptests' }}
      - uses: codecov/codecov-action@v4
        with:
          file: coverage.xml
          token: ${{ secrets.CODECOV_TOKEN }}
        if: ${{ always() }}
      - name: Upload pytest test results
        uses: actions/upload-artifact@v4
        with:
          name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.deb-depends }}
          path: test-results.xml
        if: ${{ always() && matrix.check == 'test' }}

  publish:
    runs-on: ubuntu-latest
    environment: "Package deployment"
    needs: [stable, test-package]
    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
    steps:
      - uses: actions/download-artifact@v4
        with:
          name: dist
          path: dist/
      - uses: pypa/gh-action-pypi-publish@release/v1
        with:
          user: __token__
          password: ${{ secrets.PYPI_API_TOKEN }}