From 86c7a1e69e76ac4472840af06c55583465addf65 Mon Sep 17 00:00:00 2001
From: Dimitri Papadopoulos
 <3234522+DimitriPapadopoulos@users.noreply.github.com>
Date: Wed, 20 Mar 2024 21:47:49 +0100
Subject: [PATCH 1/3] =?UTF-8?q?CI:=20flake8=20=E2=86=92=20ruff=20check?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .github/workflows/pythonpackage.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index b21bc30af..8bd0f6679 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -75,13 +75,13 @@ jobs:
         test "${INSTALLED_VERSION}" = "${THISVERSION}"
         rm -r /tmp/install_wheel
 
-  flake8:
+  ruff:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python
       uses: actions/setup-python@v5
-    - run: pipx run flake8-pyproject mriqc/
+    - run: pipx run ruff check mriqc/
 
   codespell:
     runs-on: ubuntu-latest

From cd20370a91e258706f5f06cfdef9365545d25cdb Mon Sep 17 00:00:00 2001
From: Oscar Esteban <code@oscaresteban.es>
Date: Thu, 21 Mar 2024 17:12:47 +0100
Subject: [PATCH 2/3] maint: remove pep8speaks config file

---
 .pep8speaks.yml | 12 ------------
 1 file changed, 12 deletions(-)
 delete mode 100644 .pep8speaks.yml

diff --git a/.pep8speaks.yml b/.pep8speaks.yml
deleted file mode 100644
index 0559ae817..000000000
--- a/.pep8speaks.yml
+++ /dev/null
@@ -1,12 +0,0 @@
-scanner:
-    diff_only: True  # Only show errors caused by the patch
-    linter: flake8
-
-message:  # Customize the comment made by the bot
-    opened:  # Messages when a new PR is submitted
-        header: "Hello @{name}, thank you for submitting the Pull Request!"
-        footer: "To test for issues locally, `pip install flake8` and then run `flake8 niworkflows`."
-    updated:  # Messages when new commits are added to the PR
-        header: "Hello @{name}, Thank you for updating!"
-        footer: "To test for issues locally, `pip install flake8` and then run `flake8 niworkflows`."
-    no_errors: "Cheers! There are no style issues detected in this Pull Request. :beers: "

From b05d2496f0e9796db8bd3e7b71a420e42e958100 Mon Sep 17 00:00:00 2001
From: Oscar Esteban <code@oscaresteban.es>
Date: Thu, 21 Mar 2024 17:18:15 +0100
Subject: [PATCH 3/3] enh: remove flake8 configuration from ``pyproject.toml``

---
 pyproject.toml | 10 ----------
 1 file changed, 10 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 46822c81e..fd9316089 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -173,16 +173,6 @@ exclude = '''
 )/
 '''
 
-[tool.flake8]
-max-line-length = "99"
-doctests = "False"
-exclude = "*build/"
-ignore = ["W503", "E203"]
-per-file-ignores = [
-    "**/__init__.py : F401",
-    "docs/conf.py : E265",
-]
-
 [tool.pytest.ini_options]
 minversion = "7"
 log_cli_level = "INFO"