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Note, the way this pipeline is set up (AFAIK) the only input that can be used (from the perspective of the user) exists in a specially named dir HQ_images.
The text was updated successfully, but these errors were encountered:
The current multichannel IF pipeline only checks file type is
.czi
, and assumes input is IF (i.e. not H&E).This leads to unexpected behavior if HE inputs are run.
Fail pipeline upon detection?
Test for H&E and do the right thing (wrt neuroglancer shader) ?
Note, the way this pipeline is set up (AFAIK) the only input that can be used (from the perspective of the user) exists in a specially named dir
HQ_images
.The text was updated successfully, but these errors were encountered: