From a5428bf456cf3bf46ec22a8265abae67754221b6 Mon Sep 17 00:00:00 2001
From: Annick Renevey <47788523+rannick@users.noreply.github.com>
Date: Mon, 8 Apr 2024 13:26:24 +0200
Subject: [PATCH] Update nextflow.config

Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
---
 nextflow.config | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/nextflow.config b/nextflow.config
index 23a39b21..5163dab2 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -32,13 +32,13 @@ params {
     genomes                    = [:]
 
     // Genomes options
-    fasta        = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.all.fa"
-    fai          = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.all.fa.fai"
-    gtf          = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.gtf"
-    chrgtf       = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.chr.gtf"
-    transcript   = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.cdna.all.fa.gz"
-    refflat      = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.chr.gtf.refflat"
-    rrna_intervals= "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.interval_list"
+    fasta          = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.all.fa"
+    fai            = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.all.fa.fai"
+    gtf            = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.gtf"
+    chrgtf         = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.chr.gtf"
+    transcript     = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.cdna.all.fa.gz"
+    refflat        = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.chr.gtf.refflat"
+    rrna_intervals = "${params.genomes_base}/ensembl/Homo_sapiens.${params.genome}.${params.ensembl_version}.interval_list"
 
     // Filtering
     tools_cutoff               = 1