diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f84c7719..e1028ed8 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -93,6 +93,6 @@ jobs: - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}" run: | - nextflow run ${GITHUB_WORKSPACE} -profile -profile ${{ matrix.test_name }},${{ matrix.profile }} -stub \ + nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} -stub \ --outdir /home/runner/work/rnafusion/rnafusion/results --all ${{ matrix.trim_parameters }} \ --genomes_base /home/runner/work/rnafusion/rnafusion/results/references