From aa3401a889ed595267f04a3002de7f8ef4a3833b Mon Sep 17 00:00:00 2001
From: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
Date: Wed, 12 Jun 2024 14:27:38 +0200
Subject: [PATCH 1/2] Update hasta.config

---
 conf/pipeline/taxprofiler/hasta.config | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/conf/pipeline/taxprofiler/hasta.config b/conf/pipeline/taxprofiler/hasta.config
index 0d2ace110..304a36647 100644
--- a/conf/pipeline/taxprofiler/hasta.config
+++ b/conf/pipeline/taxprofiler/hasta.config
@@ -7,6 +7,12 @@ params {
 
 process {
 
+    withName:'FASTP' {
+        memory = { check_max( 8.GB * task.attempt, 'memory'  ) }
+        time   = { check_max( 16.h  * task.attempt, 'time'    ) }
+        cpus = 6
+    }
+
     withName:'BBMAP_BBDUK' {
         memory = { check_max( 72.GB   * task.attempt, 'memory' ) }
     }

From 8fee6b89c4a40310a7cae72c0afc1541769e04fa Mon Sep 17 00:00:00 2001
From: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
Date: Wed, 12 Jun 2024 14:32:37 +0200
Subject: [PATCH 2/2] Update hasta.config

---
 conf/pipeline/taxprofiler/hasta.config | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/conf/pipeline/taxprofiler/hasta.config b/conf/pipeline/taxprofiler/hasta.config
index 304a36647..b7fcee262 100644
--- a/conf/pipeline/taxprofiler/hasta.config
+++ b/conf/pipeline/taxprofiler/hasta.config
@@ -7,6 +7,12 @@ params {
 
 process {
 
+    withName:'FASTQC' {
+        memory = { check_max( 4.GB * task.attempt, 'memory'  ) }
+        time   = { check_max( 4.h  * task.attempt, 'time'    ) }
+        cpus = 2
+    }
+
     withName:'FASTP' {
         memory = { check_max( 8.GB * task.attempt, 'memory'  ) }
         time   = { check_max( 16.h  * task.attempt, 'time'    ) }