From 3046bf9c52cdd506b69a2f3759700966a1e9c363 Mon Sep 17 00:00:00 2001
From: Victor Lin <13424970+victorlin@users.noreply.github.com>
Date: Thu, 14 Sep 2023 13:38:06 -0700
Subject: [PATCH] Conditionally include upload rule

This change allows the workflow to run when `s3_dst` is not defined,
since the upload rule requires it to be defined.
---
 ingest/Snakefile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/ingest/Snakefile b/ingest/Snakefile
index 63d6972..001cb7f 100644
--- a/ingest/Snakefile
+++ b/ingest/Snakefile
@@ -47,6 +47,7 @@ include: "workflow/snakemake_rules/fetch_sequences.smk"
 
 include: "workflow/snakemake_rules/transform.smk"
 
-include: "workflow/snakemake_rules/upload.smk"
+if "s3_dst" in config:
+    include: "workflow/snakemake_rules/upload.smk"
 
 include: "workflow/snakemake_rules/sort.smk"