diff --git a/ingest/Snakefile b/ingest/Snakefile index 63d6972..001cb7f 100644 --- a/ingest/Snakefile +++ b/ingest/Snakefile @@ -47,6 +47,7 @@ include: "workflow/snakemake_rules/fetch_sequences.smk" include: "workflow/snakemake_rules/transform.smk" -include: "workflow/snakemake_rules/upload.smk" +if "s3_dst" in config: + include: "workflow/snakemake_rules/upload.smk" include: "workflow/snakemake_rules/sort.smk"