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add phylogenetic workflow #13

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j23414 opened this issue Jul 24, 2024 · 0 comments · Fixed by #8
Closed

add phylogenetic workflow #13

j23414 opened this issue Jul 24, 2024 · 0 comments · Fixed by #8
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enhancement New feature or request

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@j23414
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j23414 commented Jul 24, 2024

Context

Modernize pathogen workflows to follow the https://github.com/nextstrain/pathogen-repo-guide

Description

Add and automate the phylogenetic workflow to analyze and display curated data from the ingest workflow.

Some enhancements that deviate from the guide:

  • Maintain segmented tree builds "L" and "S"

Examples

Possible solution
@j23414 j23414 added the enhancement New feature or request label Jul 24, 2024
@j23414 j23414 linked a pull request Jul 24, 2024 that will close this issue
Add phylogenetic #8
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@j23414 j23414 closed this as completed in #8 Aug 2, 2024
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Add phylogenetic nextstrain/lassa
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