Not a turkey but minimizes partial volume effect

[TheJaeger]

This release adds overhauls Gaussian smoothing to smooth CSF and non-CSF tissue separately without propagation to minimize CSF contamination. In doing so, we aim to minimize partial volume effect bleeding into dMRI metrics.

Added:

• CSF excluded smoothing to minimize partial volume effect (PVE).
  Two methods to do this have been implemented - (1) -cf or --csf_fsl
  using FSL FAST segmentation, and (2) -cd or --csf_adc n using
  pseudo-ADC threshold of more than 2 (ADC > 2).
• Various other support functions such as mrpreproc.csfmask() and
  mrinfoutil.shells() to support CSF masking. These functions can
  also be used for other applications
• User provided brain mask is now rotated to the same orientation as
  input DWI to prevent fitting errors from incorrect masking.

Changed

• Overhaul of preprocessing.smoothing to enable NaN-smoothing
• B0 volumes are now excluded from IRLLS outlier detection to ensure
  there are some minimum volumes present in tensor fitting. This
  prevents various fitting errors.

Removed

• None

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