diff --git a/.aicoe-ci.yaml b/.aicoe-ci.yaml index a9be8bb9..9865ae2f 100644 --- a/.aicoe-ci.yaml +++ b/.aicoe-ci.yaml @@ -1,3 +1,4 @@ +--- # Setup and configuring aicoe-ci with configuration file `.aicoe-ci.yaml` # Example `.aicoe-ci.yaml` with a full list of config options is available here: https://github.com/AICoE/aicoe-ci/blob/master/docs/.aicoe-ci.yaml check: diff --git a/.gitignore b/.gitignore index a747ab20..4a1cfccc 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,6 @@ +# PDM +.pdm-python + # Credentials / Secrets credentials.env diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f77dd665..567a7de5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -51,7 +51,7 @@ repos: # Autoformat: YAML, JSON, Markdown, etc. - repo: https://github.com/pre-commit/mirrors-prettier - rev: v4.0.0-alpha.4 + rev: v4.0.0-alpha.7 hooks: - id: prettier args: @@ -71,12 +71,12 @@ repos: # args: ['--py37-plus'] - repo: https://github.com/psf/black-pre-commit-mirror - rev: 23.11.0 + rev: 23.12.0 hooks: - id: black - repo: https://github.com/psf/black-pre-commit-mirror - rev: 23.11.0 + rev: 23.12.0 hooks: - id: black-jupyter @@ -110,7 +110,7 @@ repos: # ] - repo: https://github.com/PyCQA/isort - rev: 5.13.0 + rev: 5.13.2 hooks: - id: isort diff --git a/.prettierignore b/.prettierignore new file mode 100644 index 00000000..fa7f4267 --- /dev/null +++ b/.prettierignore @@ -0,0 +1,2 @@ +**/*.yaml +**/*.yml diff --git a/.prow.yaml b/.prow.yaml index 77dad25f..5b576821 100644 --- a/.prow.yaml +++ b/.prow.yaml @@ -1,3 +1,4 @@ +--- presubmits: - name: pre-commit decorate: true diff --git a/.thoth.yaml b/.thoth.yaml index 2482d40f..e54a21ac 100644 --- a/.thoth.yaml +++ b/.thoth.yaml @@ -1,3 +1,4 @@ +--- host: khemenu.thoth-station.ninja tls_verify: false requirements_format: pipenv diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 23d84afd..00000000 --- a/Pipfile +++ /dev/null @@ -1,34 +0,0 @@ -[[source]] -url = "https://pypi.org/simple" -verify_ssl = true -name = "pypi" - -[packages] -affine = "==2.4.0" -numpy = "==1.22.0" -pydantic = "==2.4.2" -python-dotenv = "==0.19.2" -requests = "==2.27.1" -scipy = "==1.7.3" -s3fs = "==2022.1.0" -zarr = "==2.10.3" -pillow = "==9.4.0" -dependency-injector = "==4.41.0" -numba = "==0.56.4" -pint = "*" -shapely = "*" - -[dev-packages] -isort = "*" -black = "*" -flake8 = "*" -mypy = "*" -pre-commit = "*" -tox = "*" -sphinx-toolbox = "*" -sphinx-design = "*" -nbsphinx = "*" -pydata-sphinx-theme = "*" - -[requires] -python_version = "3.8" diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index 2222a8a7..00000000 --- a/Pipfile.lock +++ /dev/null @@ -1,2352 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "a8365f6863c1c78ab17bdcf37ae035d5f7476606e9a8878001004faf0acdb9fc" - }, - "pipfile-spec": 6, - "requires": { - "python_version": "3.8" - }, - "sources": [ - { - "name": "pypi", - "url": "https://pypi.org/simple", - "verify_ssl": 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"Joe Moorhouse",email = "5102656+joemoorhouse@users.noreply.github.com"}, ] -build-backend = "setuptools.build_meta" +requires-python = ">=3.9,<3.11" +readme = "README.rst" +license = {file = "LICENSE.txt"} +keywords = ["Climate", "Risk", "Finance"] + +classifiers = [ + "Intended Audience :: Developers", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: Apache Software License", + "Operating System :: MacOS", + "Operating System :: Microsoft :: Windows", + "Operating System :: Unix", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.9", + "Topic :: Office/Business :: Financial", + "Topic :: Scientific/Engineering", + "Topic :: Software Development", +] + +[project.urls] +Homepage = "https://github.com/os-climate/physrisk" +Repository = "https://github.com/os-climate/physrisk" +Downloads = "https://github.com/os-climate/physrisk/releases" +"Bug Tracker" = "https://github.com/os-climate/physrisk/issues" +Documentation = "https://github.com/os-climate/physrisk/tree/main/docs" +"Source Code" = "https://github.com/os-climate/physrisk" + +dependencies = [ + "affine>=2.4.0", + "numpy>=1.22.0", + "pydantic>=2.4.2", + "python-dotenv>=0.19.2", + "requests>=2.27.1", + "scipy>=1.7.3", + "s3fs>=2022.1.0", + "zarr>=2.10.3", + "pillow>=9.4.0", + "dependency-injector>=4.41.0", + "numba>=0.56.4", + "pint", + "shapely", +] + +[tool.pdm.dev-dependencies] +test = [ + "pdm[pytest]", + "pytest", + "pytest-cov" +] + +docs = [ + "sphinx-toolbox", + "sphinx-design", + "nbsphinx", + "pydata-sphinx-theme" +] +lint = [ + "isort", + "black", + "pyproject-flake8", + "flake8", + "mypy", + "pre-commit", + "tox" +] + +# [project.scripts] +# osc-data-extractor = "osc_data_extractor.skeleton:run" + +[tool.pdm.scripts] +pre_release = "scripts/dev-versioning.sh" +release = "scripts/release-versioning.sh" +test = "pytest" +tox = "tox" +docs = { shell = "cd docs && mkdocs serve", help = "Start the dev server for doc preview" } +lint = "pre-commit run --all-files" +complete = { call = "tasks.complete:main", help = "Create autocomplete files for bash and fish" } [tool.pytest.ini_options] -testpaths = "src/test" -addopts = "-v" +testpaths = [ + "tests/", +] +addopts = "--cov --cov-report html --cov-report term-missing --cov-fail-under 95" -[tool.mypy] -warn_unreachable = true -ignore_missing_imports = true +[metadata] +license-files = ["LICENSES.txt"] -[[tool.mypy.overrides]] -module = "click" -ignore_missing_imports = true +#[tool.pytest.ini_options] +#testpaths = "tests" +#addopts = "-v" + +#[tool.mypy] +#module = "click" +#warn_unreachable = true +#ignore_missing_imports = true + +[tool.isort] +profile = "black" +multi_line_output = 3 +include_trailing_comma = true +force_grid_wrap = 0 +use_parentheses = true +ensure_newline_before_comments = true +line_length = 120 + +[tool.coverage.run] +source = "src" +omit = "tests/*" +relative_files = true + +[tool.yapf] +blank_line_before_nested_class_or_def = true +column_limit = 88 [tool.black] line-length = 120 @@ -31,15 +137,8 @@ exclude = ''' )/ ''' -[tool.isort] -multi_line_output = 3 -include_trailing_comma = true -force_grid_wrap = 0 -use_parentheses = true -ensure_newline_before_comments = true -line_length = 120 - -[tool.coverage.run] -source = "src" -omit = "test/*" -relative_files = true +[tool.flake8] +max-line-length = "120" +extend-ignore = [ + "E501", +] diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 063d0ced..00000000 --- a/setup.cfg +++ /dev/null @@ -1,37 +0,0 @@ -[metadata] -name = physrisk-lib -author = OS-Climate -author_email = joe.moorhouse@gmail.com -description = Physical risk calculation engine -long_description = file: README.md -long_description_content_type = text/markdown -url = https://github.com/os-climate/physrisk -project_urls = - Bug Tracker = https://github.com/os-climate -classifiers = - Programming Language :: Python :: 3 - License :: OSI Approved :: Apache Software License - Operating System :: OS Independent - -[options] -packages = find: -package_dir = - =src -python_requires = >=3.8 -install_requires = - affine==2.3.0 - dependency-injector==4.41.0 - numba==0.56.4 - numpy==1.22.0 - pillow==9.4.0 - pydantic==2.4.2 - python-dotenv==0.19.2 - requests==2.27.1 - scipy==1.7.3 - shapely==2.0.1 - s3fs==2022.1.0 - zarr==2.10.3 - -[options.packages.find] -where = src -include = physrisk* diff --git a/setup.py b/setup.py deleted file mode 100644 index 9362ef65..00000000 --- a/setup.py +++ /dev/null @@ -1,12 +0,0 @@ -import os - -from setuptools import setup - - -def get_version(): - dir = os.path.abspath(os.path.dirname(__file__)) - with open(os.path.join(dir, "VERSION"), "r") as fp: - return fp.read() - - -setup(version=get_version(), include_package_data=True) diff --git a/src/physrisk-lib b/src/physrisk-lib new file mode 120000 index 00000000..90d976b2 --- /dev/null +++ b/src/physrisk-lib @@ -0,0 +1 @@ +physrisk \ No newline at end of file diff --git a/src/test/__init__.py b/tests/__init__.py similarity index 100% rename from src/test/__init__.py rename to tests/__init__.py diff --git a/src/test/api/__init__.py b/tests/api/__init__.py similarity index 100% rename from src/test/api/__init__.py rename to tests/api/__init__.py diff --git a/src/test/api/container.py b/tests/api/container.py similarity index 100% rename from src/test/api/container.py rename to tests/api/container.py diff --git a/src/test/api/test_data_requests.py b/tests/api/test_data_requests.py similarity index 100% rename from src/test/api/test_data_requests.py rename to tests/api/test_data_requests.py diff --git a/src/test/api/test_impact_requests.py b/tests/api/test_impact_requests.py similarity index 100% rename from src/test/api/test_impact_requests.py rename to tests/api/test_impact_requests.py diff --git a/src/test/api/test_lat_lons.json.zip b/tests/api/test_lat_lons.json.zip similarity index 100% rename from src/test/api/test_lat_lons.json.zip rename to tests/api/test_lat_lons.json.zip diff --git a/src/test/base_test.py b/tests/base_test.py similarity index 100% rename from src/test/base_test.py rename to tests/base_test.py diff --git a/src/test/data/__init__.py b/tests/data/__init__.py similarity index 100% rename from src/test/data/__init__.py rename to tests/data/__init__.py diff --git a/src/test/data/hazard_model_store.py b/tests/data/hazard_model_store.py similarity index 100% rename from src/test/data/hazard_model_store.py rename to tests/data/hazard_model_store.py diff --git a/src/test/data/test_events_retrieval.py b/tests/data/test_events_retrieval.py similarity index 100% rename from src/test/data/test_events_retrieval.py rename to tests/data/test_events_retrieval.py diff --git a/src/test/data/test_static_data.py b/tests/data/test_static_data.py similarity index 100% rename from src/test/data/test_static_data.py rename to tests/data/test_static_data.py diff --git a/src/test/kernel/__init__.py b/tests/kernel/__init__.py similarity index 100% rename from src/test/kernel/__init__.py rename to tests/kernel/__init__.py diff --git a/src/test/kernel/test_asset_impact.py b/tests/kernel/test_asset_impact.py similarity index 100% rename from src/test/kernel/test_asset_impact.py rename to tests/kernel/test_asset_impact.py diff --git a/src/test/kernel/test_chronic_asset_impact.py b/tests/kernel/test_chronic_asset_impact.py similarity index 100% rename from src/test/kernel/test_chronic_asset_impact.py rename to tests/kernel/test_chronic_asset_impact.py diff --git a/src/test/kernel/test_curves.py b/tests/kernel/test_curves.py similarity index 100% rename from src/test/kernel/test_curves.py rename to tests/kernel/test_curves.py diff --git a/src/test/kernel/test_exposure.py b/tests/kernel/test_exposure.py similarity index 100% rename from src/test/kernel/test_exposure.py rename to tests/kernel/test_exposure.py diff --git a/src/test/kernel/test_financial_model.py b/tests/kernel/test_financial_model.py similarity index 100% rename from src/test/kernel/test_financial_model.py rename to tests/kernel/test_financial_model.py diff --git a/src/test/kernel/test_hazard_models.py b/tests/kernel/test_hazard_models.py similarity index 100% rename from src/test/kernel/test_hazard_models.py rename to tests/kernel/test_hazard_models.py diff --git a/src/test/kernel/test_image_creation.py b/tests/kernel/test_image_creation.py similarity index 100% rename from src/test/kernel/test_image_creation.py rename to tests/kernel/test_image_creation.py diff --git a/src/test/kernel/test_live_services.py b/tests/kernel/test_live_services.py similarity index 100% rename from src/test/kernel/test_live_services.py rename to tests/kernel/test_live_services.py diff --git a/src/test/models/__init__.py b/tests/models/__init__.py similarity index 100% rename from src/test/models/__init__.py rename to tests/models/__init__.py diff --git a/src/test/models/test_WBGT_Model.py b/tests/models/test_WBGT_Model.py similarity index 100% rename from src/test/models/test_WBGT_Model.py rename to tests/models/test_WBGT_Model.py diff --git a/src/test/models/test_example_models.py b/tests/models/test_example_models.py similarity index 100% rename from src/test/models/test_example_models.py rename to tests/models/test_example_models.py diff --git a/src/test/models/test_multiple_assets.py b/tests/models/test_multiple_assets.py similarity index 100% rename from src/test/models/test_multiple_assets.py rename to tests/models/test_multiple_assets.py diff --git a/src/test/models/test_power_generating_asset_models.py b/tests/models/test_power_generating_asset_models.py similarity index 100% rename from src/test/models/test_power_generating_asset_models.py rename to tests/models/test_power_generating_asset_models.py diff --git a/src/test/models/test_real_estate_models.py b/tests/models/test_real_estate_models.py similarity index 100% rename from src/test/models/test_real_estate_models.py rename to tests/models/test_real_estate_models.py diff --git a/src/test/models/test_wind_models.py b/tests/models/test_wind_models.py similarity index 100% rename from src/test/models/test_wind_models.py rename to tests/models/test_wind_models.py diff --git a/src/test/models/test_wind_turbine_models.py b/tests/models/test_wind_turbine_models.py similarity index 100% rename from src/test/models/test_wind_turbine_models.py rename to tests/models/test_wind_turbine_models.py diff --git a/src/test/risk_models/__init__.py b/tests/risk_models/__init__.py similarity index 100% rename from src/test/risk_models/__init__.py rename to tests/risk_models/__init__.py diff --git a/src/test/risk_models/test_risk_models.py b/tests/risk_models/test_risk_models.py similarity index 100% rename from src/test/risk_models/test_risk_models.py rename to tests/risk_models/test_risk_models.py