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Ensembl Connectivity Warning #103

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qhauck16 opened this issue May 1, 2024 · 1 comment
Open

Ensembl Connectivity Warning #103

qhauck16 opened this issue May 1, 2024 · 1 comment

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@qhauck16
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qhauck16 commented May 1, 2024

I get this warning for every run, which is not surprising, as I am running on a compute node with no internet connection. I looked through the docs and am unclear why JaBbA would be using Ensembl/biomart - just wanted some context on if this is an issue or if it can be ignored?

Possible Ensembl SSL connectivity problems detected.
Please see the 'Connection Troubleshooting' section of the biomaRt vignette
vignette('accessing_ensembl', package = 'biomaRt')Error in curl::curl_fetch_memory(url, handle = handle) :
SSL certificate problem: certificate has expired

@jrafailov
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jrafailov commented May 1, 2024

Can be ignored. BiomaRt is in the tree dependency of JaBbA but no biomaRt calls are made within JaBbA.

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