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Currently, due to limitations of supplied data, train-data-creator doesn't use SYMBOL ID's, but instead relies on (not-normalized) SYMBOL to map back a variant after being annotated by VEP. This could potentially cause issues as SYMBOL ID's are set, but SYMBOL is not, so SYMBOL could change at any minute.
System information
OS: [e.g. iOS]
Version: [e.g. 3.0.0]
Python version: [e.g. Python3.9.1]
Shell: [e.g. ZSH]
How to Reproduce
Steps to reproduce the behavior:
cd to dir [...]
Run the command [...]
See error.
Expected behavior
train-data-creator uses SYMBOL ID's instead of SYMBOL. This means that process-vep should also take this into account, although mapping 1 to 1 (or 1 to many: #54 ) should not limit the use of SYMBOL ID's.
Logs
If available, the generated logging information and/or error message (can also be attached as a file if very large).
Screenshots
If applicable, add screenshots to help explain your problem.
Describe the bug
Currently, due to limitations of supplied data,
train-data-creator
doesn't use SYMBOL ID's, but instead relies on (not-normalized) SYMBOL to map back a variant after being annotated by VEP. This could potentially cause issues as SYMBOL ID's are set, but SYMBOL is not, so SYMBOL could change at any minute.System information
How to Reproduce
Steps to reproduce the behavior:
cd
to dir [...][...]
Expected behavior
train-data-creator
uses SYMBOL ID's instead of SYMBOL. This means thatprocess-vep
should also take this into account, although mapping 1 to 1 (or 1 to many: #54 ) should not limit the use of SYMBOL ID's.Logs
If available, the generated logging information and/or error message (can also be attached as a file if very large).
Screenshots
If applicable, add screenshots to help explain your problem.
Additional context
#51 (comment)
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