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dog1.ini
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[fem]
translate = (0.293,0.0634,0.12345)
rotatez = -90.0
rotatey = 0.0
rotatex = 90.0
scale = [1.,1.,1.]
;mesh_files= ['fem_stats.e' ]
mesh_files= ['fem_stats.%04d.e' % i for i in range(10)]
work_dir = dog1_2
[imaging]
;offset averaging +/- in both directions about center
listoffset = [-2,-1,0,1,2]
dimensions = [256,256,5]
spacing = [0.0008,0.0008,4.000000e-03]
origin = [0.172550,-0.028675,0.115390]
; elif (data_set == "dog2"):
; # should be in meters
; Translate = (0.2335,0.235,-0.0335)
; RotateZ = 6.0
; RotateY = 0.0
; RotateX = 90.0
; Scale = [1.,1.,1.]
; ImageFileTemplate = '/data/sjfahrenholtz/mdacc/Dog/dog2_98000/mrivis/temperature.0000.vtk'
; ImageFileTemplate = '/FUS4/data2/BioTex/Brain_PhaseII/060626_BrainDog1_Treat/ProcessedTMAPData/BioTexCanines/dog2dtmap.0000.vtk'
; elif (data_set == "dog3"):
; # should be in meters
; Translate = (0.209,0.2625,-0.0247)
; RotateZ = -8.0
; RotateY = 0.0
; RotateX = 90.0
; Scale = [1.,1.,1.]
; ImageFileTemplate = '/data/sjfahrenholtz/mdacc/Dog/dog3_98000/mrivis/temperature.0000.vtk'
; ImageFileTemplate = '/FUS4/data2/BioTex/Brain_PhaseII/060626_BrainDog1_Treat/ProcessedTMAPData/BioTexCanines/dog3dtmap.0000.vtk'
; elif (data_set == "dog4"):
; # should be in meters
; Translate = (0.195,0.245,-0.0715)
; RotateZ = -15.0
; RotateY = 0.0
; RotateX = 90.0
; Scale = [1.,1.,1.]
; ImageFileTemplate = '/FUS4/data2/BioTex/Brain_PhaseII/060626_BrainDog1_Treat/ProcessedTMAPData/BioTexCanines/dog4dtmap.0000.vtk'
; elif (data_set == "human0"):
; # should be in meters
; vtkReader = vtk.vtkXMLImageDataReader()
; Translate = (0.051,0.080,0.0509)
; RotateZ = 29.0
; RotateY = 86.0
; RotateX = 0.0
; Scale = [1.,1.,1.]
; ImageFileTemplate = '/data/fuentes/biotex/090318_751642_treat/Processed/imaging/temperature.0000.vti'
; elif (data_set == "agar0"):
; # should be in meters
; Translate = (0.0,0.13,-0.095)
; RotateZ = 0.0
; RotateY = 180.0
; RotateX = 0.0
; Scale = [1.,1.,1.]
; ImageFileTemplate = '/data/jyung/MotionCorrection/motion_phantom_sept11/tmap.0000.vtk'
; else:
; raise RuntimeError("\n\n unknown case... ")