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uEMEP_read_EMEP.f90
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uEMEP_read_EMEP.f90
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!uEMEP_read_EMEP
subroutine uEMEP_read_EMEP
use uEMEP_definitions
use netcdf
implicit none
integer i,j,k,t
integer ii,jj,iii,jjj,iiii,jjjj
logical exists
character(256) pathfilename_nc
integer status_nc !Error message
integer id_nc
integer dim_id_nc(num_dims_nc)
character(256) dimname_temp,var_name_nc_temp,var_name_nc_temp2,unit_name_nc_temp
integer var_id_nc
real :: local_fraction_scaling=1.0
integer i_file,i_source,i_conc,i_dim
integer temp_frac_index,temp_file_index,temp_compound_index,temp_source_index
integer temp_num_dims
integer temp_start_time_nc_index,temp_end_time_nc_index
integer i_loop
integer valid_dim_length_nc(num_dims_nc) !dimensions of file 1
integer numAtts_projection
integer surface_level_nc_2
real temp_lat(4),temp_lon(4)
real temp_y(4),temp_x(4)
real temp_x_min,temp_x_max,temp_y_min,temp_y_max
integer i_temp_min,i_temp_max,j_temp_min,j_temp_max
double precision temp_var1d_nc_dp(2,2)
real temp_delta(2)
real H_emep_temp
integer n_file
double precision date_num_temp,date_num_2000
integer date_array(6)
double precision scale_factor_nc
integer i_pollutant,p_loop,p_loop_index
integer DMT_start_time_nc_index,DMT_end_time_nc_index,DMT_dim_length_nc
logical nonzero_wind_notfound
integer i_sp,ii_sp,pmxx_sp_index
integer i_depo
!Temporary reading variables
double precision, allocatable :: var1d_nc_dp(:)
double precision, allocatable :: var2d_nc_dp(:,:)
double precision, allocatable :: var3d_nc_dp(:,:,:)
double precision, allocatable :: var4d_nc_dp(:,:,:,:)
!Temporary files for rotating wind field and PM
real, allocatable :: temp_var4d_nc(:,:,:,:,:)
real, allocatable :: temp_var3d_nc(:,:,:)
!Temporary PM arrays for reading in PM10
real, allocatable :: pm_var4d_nc(:,:,:,:,:,:,:)
real, allocatable :: pm_var3d_nc(:,:,:,:,:,:)
real, allocatable :: pm_lc_var4d_nc(:,:,:,:,:,:,:,:,:)
real, allocatable :: species_temp_var3d_nc(:,:,:)
!NOTE: temporary for nh3 false is not on
logical :: use_comp_temporary=.false.
logical :: EMEP_region_outside_domain=.false.
real EMEP_grid_interpolation_size_temp
real mean_phi_temp,mean_invL_temp
integer phi_count
!Functions
double precision date_to_number
write(unit_logfile,'(A)') ''
write(unit_logfile,'(A)') '================================================================'
write(unit_logfile,'(A)') 'Reading EMEP data (uEMEP_read_EMEP)'
write(unit_logfile,'(A)') '================================================================'
!This if statement is already specified in uEMEP_define_subgrid and is not necessary here
if (hourly_calculations) then
temp_start_time_nc_index=start_time_nc_index
temp_end_time_nc_index=end_time_nc_index
else
temp_start_time_nc_index=1
temp_end_time_nc_index=1
endif
if (use_single_time_loop_flag) then
temp_start_time_nc_index=start_time_nc_index+t_loop-1
temp_end_time_nc_index=temp_start_time_nc_index
endif
!Presettng the surface level to 1. Valid when there is no inverting of layers
surface_level_nc=EMEP_surface_level_nc
surface_level_nc_2=EMEP_surface_level_nc_2
write(unit_logfile,'(A,I)') ' Surface level base set to: ',surface_level_nc
write(unit_logfile,'(A,I)') ' Surface level local_contribution set to: ',surface_level_nc_2
if (allocated(val_dim_nc)) deallocate (val_dim_nc)
if (allocated(unit_dim_nc)) deallocate (unit_dim_nc)
if (allocated(var1d_nc)) deallocate (var1d_nc)
if (allocated(var2d_nc)) deallocate (var2d_nc)
if (allocated(var3d_nc)) deallocate (var3d_nc)
if (allocated(var4d_nc)) deallocate (var4d_nc)
if (allocated(comp_var3d_nc)) deallocate (comp_var3d_nc)
if (allocated(comp_var4d_nc)) deallocate (comp_var4d_nc)
if (allocated(var1d_nc_dp)) deallocate (var1d_nc_dp)
if (allocated(var2d_nc_dp)) deallocate (var2d_nc_dp)
if (allocated(lc_var3d_nc)) deallocate (lc_var3d_nc)
if (allocated(lc_var4d_nc)) deallocate (lc_var4d_nc)
if (allocated(DMT_EMEP_grid_nc)) deallocate (DMT_EMEP_grid_nc) !Daily mean temperature
if (allocated(species_var3d_nc)) deallocate (species_var3d_nc)
if (allocated(depo_var3d_nc)) deallocate (depo_var3d_nc)
if (allocated(temp_var3d_nc)) deallocate (temp_var3d_nc)
!Loop through the EMEP files containing the data
n_file=2
do i_file=1,n_file
!Temporary fix. Must remove
!if (i_file.eq.2) dim_name_nc(z_dim_nc_index)='klevel'
!Set the filename
pathfilename_EMEP(i_file)=trim(pathname_EMEP(i_file))//trim(filename_EMEP(i_file))
!Test existence of the filename. If does not exist then stop
inquire(file=trim(pathfilename_EMEP(i_file)),exist=exists)
if (.not.exists) then
write(unit_logfile,'(A,A)') ' ERROR: Netcdf file does not exist: ', trim(pathfilename_EMEP(i_file))
write(unit_logfile,'(A)') ' STOPPING'
stop
endif
!Open the netcdf file for reading
write(unit_logfile,'(2A)') ' Opening netcdf file: ',trim(pathfilename_EMEP(i_file))
status_nc = NF90_OPEN (pathfilename_EMEP(i_file), nf90_nowrite, id_nc)
if (status_nc .NE. NF90_NOERR) write(unit_logfile,'(A,I)') 'ERROR opening netcdf file: ',status_nc
EMEP_projection_type=LL_projection_index
!Find the projection. If no projection then in lat lon coordinates
status_nc = NF90_INQ_VARID (id_nc,'projection_lambert',var_id_nc)
if (status_nc.eq.NF90_NOERR) then
!If there is a projection then read in the attributes. All these are doubles
!status_nc = nf90_inquire_variable(id_nc, var_id_nc, natts = numAtts_projection)
status_nc = nf90_get_att(id_nc, var_id_nc, 'standard_parallel', EMEP_projection_attributes(1:2))
status_nc = nf90_get_att(id_nc, var_id_nc, 'longitude_of_central_meridian', EMEP_projection_attributes(3))
status_nc = nf90_get_att(id_nc, var_id_nc, 'latitude_of_projection_origin', EMEP_projection_attributes(4))
status_nc = nf90_get_att(id_nc, var_id_nc, 'earth_radius', EMEP_projection_attributes(5))
EMEP_projection_type=LCC_projection_index
!Reset names of the x,y coordinates
dim_name_nc(x_dim_nc_index)='i'
dim_name_nc(y_dim_nc_index)='j'
var_name_nc(lon_nc_index,:,allsource_index)='lon'
var_name_nc(lat_nc_index,:,allsource_index)='lat'
write(unit_logfile,'(A,5f12.2)') 'Reading lambert_conformal_conic projection. ',EMEP_projection_attributes(1:5)
if (EMEP_projection_attributes(1).ne.EMEP_projection_attributes(4).or.EMEP_projection_attributes(2).ne.EMEP_projection_attributes(4)) then
use_alternative_LCC_projection_flag=.true.
write(unit_logfile,'(A,l)') 'Using alternative lambert_conformal_conic projection: ',use_alternative_LCC_projection_flag
else
use_alternative_LCC_projection_flag=.false.
endif
!Always set to true
use_alternative_LCC_projection_flag=.true.
endif
!Find the projection. If no projection then in lat lon coordinates
status_nc = NF90_INQ_VARID (id_nc,'Polar_Stereographic',var_id_nc)
if (status_nc.eq.NF90_NOERR) then
!If there is a projection then read in the attributes. All these are doubles
!status_nc = nf90_inquire_variable(id_nc, var_id_nc, natts = numAtts_projection)
EMEP_projection_attributes=0.
status_nc = nf90_get_att(id_nc, var_id_nc, 'straight_vertical_longitude_from_pole', EMEP_projection_attributes(1))
status_nc = nf90_get_att(id_nc, var_id_nc, 'latitude_of_projection_origin', EMEP_projection_attributes(2))
status_nc = nf90_get_att(id_nc, var_id_nc, 'false_easting', EMEP_projection_attributes(3))
if (status_nc.ne.NF90_NOERR) EMEP_projection_attributes(3)=0.
status_nc = nf90_get_att(id_nc, var_id_nc, 'false_northing', EMEP_projection_attributes(4))
if (status_nc.ne.NF90_NOERR) EMEP_projection_attributes(4)=0.
status_nc = nf90_get_att(id_nc, var_id_nc, 'earth_radius', EMEP_projection_attributes(5))
if (status_nc.ne.NF90_NOERR) EMEP_projection_attributes(5)=6.370e6
status_nc = nf90_get_att(id_nc, var_id_nc, 'scale_factor_at_projection_origin', EMEP_projection_attributes(6))
if (status_nc.ne.NF90_NOERR) EMEP_projection_attributes(6)=1.
EMEP_projection_type=PS_projection_index
!Reset names of the x,y coordinates
dim_name_nc(x_dim_nc_index)='i'
dim_name_nc(y_dim_nc_index)='j'
var_name_nc(lon_nc_index,:,allsource_index)='lon'
var_name_nc(lat_nc_index,:,allsource_index)='lat'
write(unit_logfile,'(A,6f12.2)') 'Reading Polar_Stereographic: ',EMEP_projection_attributes(1:6)
endif
!Find the (x,y,z,time,xdist,ydist) dimensions of the file
do i_dim=1,num_dims_nc
status_nc = NF90_INQ_DIMID (id_nc,dim_name_nc(i_dim),dim_id_nc(i_dim))
status_nc = NF90_INQUIRE_DIMENSION (id_nc,dim_id_nc(i_dim),dimname_temp,dim_length_nc(i_dim))
if (status_nc .NE. NF90_NOERR) then
write(unit_logfile,'(A,A,A,I)') 'No dimension information available for ',trim(dim_name_nc(i_dim)),' Setting to 1 with status: ',status_nc
dim_length_nc(i_dim)=1
endif
enddo
if (subgrid_dim(t_dim_index).gt.dim_length_nc(time_dim_nc_index)) then
write(unit_logfile,'(A,2I)') 'ERROR: Specified time dimensions are greater than EMEP netcdf dimensions. Stopping ',subgrid_dim(t_dim_index),dim_length_nc(time_dim_nc_index)
stop
endif
write(unit_logfile,'(A,6I)') ' Size of dimensions (x,y,z,t,xdist,ydist): ',dim_length_nc
dim_length_EMEP_nc=dim_length_nc
dim_start_nc(time_dim_nc_index)=temp_start_time_nc_index
dim_length_nc(time_dim_nc_index)=min(dim_length_nc(time_dim_nc_index),subgrid_dim(t_dim_index))
write(unit_logfile,'(A,6I)') ' New size of dimensions (x,y,z,t,xdist,ydist): ',dim_length_nc
if (mod(dim_length_nc(xdist_dim_nc_index),2).ne.1.or.mod(dim_length_nc(ydist_dim_nc_index),2).ne.1) then
write(unit_logfile,'(A,2I)') ' ERROR: Even sized dimensions for local contribution. Must be odd: ',dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index)
stop
endif
if (i_file.eq.2) then
xdist_centre_nc=1+dim_length_nc(xdist_dim_nc_index)/2
ydist_centre_nc=1+dim_length_nc(ydist_dim_nc_index)/2
write(unit_logfile,'(A,2I)') ' Centre index of local contribution dimensions: ',xdist_centre_nc,ydist_centre_nc
endif
!Calculate the necessary extent of the EMEP grid region and only read these grids
if (reduce_EMEP_region_flag) then
!EMEP_grid_interpolation_size_temp=max(EMEP_grid_interpolation_size*local_fraction_grid_size_scaling,EMEP_additional_grid_interpolation_size_original*local_fraction_additional_grid_size_scaling)
EMEP_grid_interpolation_size_temp=EMEP_grid_interpolation_size*local_fraction_grid_size_scaling
write(unit_logfile,'(A,f12.2)') 'Reducing EMEP domain. EMEP grid interpolation size is now = ',EMEP_grid_interpolation_size_temp
!Determine the LL cordinates of the target grid
!if (EMEP_projection_type.eq.LCC_projection_index) then
!Retrieve the four corners of the target grid in lat and lon
call PROJ2LL(init_subgrid_min(x_dim_index),init_subgrid_min(y_dim_index),temp_lon(1),temp_lat(1),projection_attributes,projection_type)
call PROJ2LL(init_subgrid_max(x_dim_index),init_subgrid_max(y_dim_index),temp_lon(2),temp_lat(2),projection_attributes,projection_type)
call PROJ2LL(init_subgrid_min(x_dim_index),init_subgrid_max(y_dim_index),temp_lon(3),temp_lat(3),projection_attributes,projection_type)
call PROJ2LL(init_subgrid_max(x_dim_index),init_subgrid_min(y_dim_index),temp_lon(4),temp_lat(4),projection_attributes,projection_type)
!if (projection_type.eq.RDM_projection_index) then
! call RDM2LL(init_subgrid_min(y_dim_index),init_subgrid_min(x_dim_index),temp_lat(1),temp_lon(1))
! call RDM2LL(init_subgrid_max(y_dim_index),init_subgrid_max(x_dim_index),temp_lat(2),temp_lon(2))
! call RDM2LL(init_subgrid_max(y_dim_index),init_subgrid_min(x_dim_index),temp_lat(3),temp_lon(3))
! call RDM2LL(init_subgrid_min(y_dim_index),init_subgrid_max(x_dim_index),temp_lat(4),temp_lon(4))
!elseif (projection_type.eq.UTM_projection_index) then
! call UTM2LL(utm_zone,init_subgrid_min(y_dim_index),init_subgrid_min(x_dim_index),temp_lat(1),temp_lon(1))
! call UTM2LL(utm_zone,init_subgrid_max(y_dim_index),init_subgrid_max(x_dim_index),temp_lat(2),temp_lon(2))
! call UTM2LL(utm_zone,init_subgrid_max(y_dim_index),init_subgrid_min(x_dim_index),temp_lat(3),temp_lon(3))
! call UTM2LL(utm_zone,init_subgrid_min(y_dim_index),init_subgrid_max(x_dim_index),temp_lat(4),temp_lon(4))
!endif
!This did not work because it was almost all of the grid and because the min and max lat lon did not cover all stations
!if (read_EMEP_only_once_flag.and.use_multiple_receptor_grids_flag) then
! temp_lat(1)=minval(lat_receptor(1:n_receptor_in));temp_lon(1)=minval(lon_receptor(1:n_receptor_in))
! temp_lat(2)=maxval(lat_receptor(1:n_receptor_in));temp_lon(2)=maxval(lon_receptor(1:n_receptor_in))
! temp_lat(3)=maxval(lat_receptor(1:n_receptor_in));temp_lon(3)=minval(lon_receptor(1:n_receptor_in))
! temp_lat(4)=minval(lat_receptor(1:n_receptor_in));temp_lon(4)=maxval(lon_receptor(1:n_receptor_in))
! write(*,*) temp_lat
! write(*,*) temp_lon
!endif
temp_x_min=1.e32;temp_y_min=1.e32
temp_x_max=-1.e32;temp_y_max=-1.e32
if (EMEP_projection_type.eq.LCC_projection_index) then
!Convert lat lon corners to lambert
do i=1,4
!if (use_alternative_LCC_projection_flag) then
call lb2lambert2_uEMEP(temp_x(i),temp_y(i),temp_lon(i),temp_lat(i),EMEP_projection_attributes)
!else
! call lb2lambert_uEMEP(temp_x(i),temp_y(i),temp_lon(i),temp_lat(i),real(EMEP_projection_attributes(3)),real(EMEP_projection_attributes(4)))
!endif
!call lb2lambert_uEMEP(temp_x(i),temp_y(i),temp_lon(i),temp_lat(i),real(EMEP_projection_attributes(3)),real(EMEP_projection_attributes(4)))
enddo
!write(*,*) temp_x
!write(*,*) temp_y
elseif (EMEP_projection_type.eq.PS_projection_index) then
!Convert lat lon corners to Polar Stereo
do i=1,4
call LL2PS_spherical(temp_x(i),temp_y(i),temp_lon(i),temp_lat(i),EMEP_projection_attributes)
enddo
elseif (EMEP_projection_type.eq.LL_projection_index) then
!Set lat lon corners if EMEP is in lat lon
temp_x=temp_lon;temp_y=temp_lat
else
!Otherwise assume the same coordinate system
temp_x(1)=init_subgrid_min(x_dim_index);temp_y(1)=init_subgrid_min(y_dim_index)
temp_x(2)=init_subgrid_max(x_dim_index);temp_y(2)=init_subgrid_min(y_dim_index)
temp_x(3)=init_subgrid_min(x_dim_index);temp_y(3)=init_subgrid_max(y_dim_index)
temp_x(4)=init_subgrid_max(x_dim_index);temp_y(4)=init_subgrid_max(y_dim_index)
endif
do i=1,4
!write(*,*) temp_x(i),temp_y(i)
if (temp_x(i).lt.temp_x_min) temp_x_min=temp_x(i)
if (temp_y(i).lt.temp_y_min) temp_y_min=temp_y(i)
if (temp_x(i).gt.temp_x_max) temp_x_max=temp_x(i)
if (temp_y(i).gt.temp_y_max) temp_y_max=temp_y(i)
enddo
!Read in the first 2 x and y position values from the nc file to get min values and delta values
!write(*,*) temp_x_min,temp_x_max,temp_y_min,temp_y_max
!Save these values, min and max extent of the calculation grid in emep coordinates, for possible use later
if (limit_emep_grid_interpolation_region_to_calculation_region) then
subgrid_proj_min(y_dim_index)=temp_y_min
subgrid_proj_max(y_dim_index)=temp_y_max
subgrid_proj_min(x_dim_index)=temp_x_min
subgrid_proj_max(x_dim_index)=temp_x_max
endif
status_nc = NF90_INQ_VARID (id_nc, trim(dim_name_nc(x_dim_nc_index)), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc,temp_var1d_nc_dp(1,1:2),start=(/1/),count=(/2/))
status_nc = NF90_INQ_VARID (id_nc, trim(dim_name_nc(y_dim_nc_index)), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc,temp_var1d_nc_dp(2,1:2),start=(/1/),count=(/2/))
status_nc = nf90_get_att(id_nc, var_id_nc, "units", unit_name_nc_temp)
if (trim(unit_name_nc_temp).eq.'km') then
write(unit_logfile,'(A)') 'Units of x y data are in kilometres. Converting to metres'
temp_var1d_nc_dp=temp_var1d_nc_dp*1000.
endif
!write(*,*) temp_var1d_nc_dp
temp_delta(1)=temp_var1d_nc_dp(1,2)-temp_var1d_nc_dp(1,1)
temp_delta(2)=temp_var1d_nc_dp(2,2)-temp_var1d_nc_dp(2,1)
!write(*,*) temp_delta
!Find grid position of the max and min coordinates and add2 grids*EMEP_grid_interpolation_size_temp
i_temp_min=1+floor((temp_x_min-temp_var1d_nc_dp(1,1))/temp_delta(1)+0.5)
i_temp_max=1+floor((temp_x_max-temp_var1d_nc_dp(1,1))/temp_delta(1)+0.5)
j_temp_min=1+floor((temp_y_min-temp_var1d_nc_dp(2,1))/temp_delta(2)+0.5)
j_temp_max=1+floor((temp_y_max-temp_var1d_nc_dp(2,1))/temp_delta(2)+0.5)
i_temp_min=1+floor((temp_x_min-temp_var1d_nc_dp(1,1))/temp_delta(1)+0.5)
i_temp_max=1+ceiling((temp_x_max-temp_var1d_nc_dp(1,1))/temp_delta(1)+0.5)
j_temp_min=1+floor((temp_y_min-temp_var1d_nc_dp(2,1))/temp_delta(2)+0.5)
j_temp_max=1+ceiling((temp_y_max-temp_var1d_nc_dp(2,1))/temp_delta(2)+0.5)
!write(unit_logfile,'(A,2I)') ' Reading EMEP i grids: ',i_temp_min,i_temp_max
!write(unit_logfile,'(A,2I)') ' Reading EMEP j grids: ',j_temp_min,j_temp_max
i_temp_min=max(1,i_temp_min-1-ceiling(1.*EMEP_grid_interpolation_size_temp))
i_temp_max=min(dim_length_nc(x_dim_nc_index),i_temp_max+1+ceiling(1.*EMEP_grid_interpolation_size_temp))
j_temp_min=max(1,j_temp_min-1-ceiling(1.*EMEP_grid_interpolation_size_temp))
j_temp_max=min(dim_length_nc(y_dim_nc_index),j_temp_max+1+ceiling(1.*EMEP_grid_interpolation_size_temp))
dim_length_nc(x_dim_nc_index)=i_temp_max-i_temp_min+1
dim_length_nc(y_dim_nc_index)=j_temp_max-j_temp_min+1
dim_start_nc(x_dim_nc_index)=i_temp_min
dim_start_nc(y_dim_nc_index)=j_temp_min
write(unit_logfile,'(A,3I)') ' Reading EMEP i grids: ',i_temp_min,i_temp_max,dim_length_nc(x_dim_nc_index)
write(unit_logfile,'(A,3I)') ' Reading EMEP j grids: ',j_temp_min,j_temp_max,dim_length_nc(y_dim_nc_index)
dim_start_EMEP_nc=dim_start_nc
!endif
endif
if (dim_length_nc(x_dim_nc_index).lt.1.or.dim_length_nc(y_dim_nc_index).lt.1) then
write(unit_logfile,'(A,2I)') ' WARNING: Selected EMEP region dimensions are less than 1 (i,j): ',dim_length_nc
write(unit_logfile,'(A)') ' Setting to 1 but this selected region is invalid and should not be calculated '
write(unit_logfile,'(A)') ' This can happen if a receptor is outside the EMEP domain'
dim_length_nc=1
dim_start_nc(x_dim_nc_index)=1
dim_start_nc(y_dim_nc_index)=1
EMEP_region_outside_domain=.true.
endif
!Allocate the nc arrays for reading
if (.not.allocated(val_dim_nc)) allocate (val_dim_nc(maxval(dim_length_nc),num_dims_nc)) !x, y, z and time dimension values
if (.not.allocated(unit_dim_nc)) allocate (unit_dim_nc(num_dims_nc)) !x, y, z and time dimension values
if (.not.allocated(var1d_nc)) allocate (var1d_nc(maxval(dim_length_nc),num_dims_nc)) !x, y, z and time maximum dimensions
if (.not.allocated(var2d_nc)) allocate (var2d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),2)) !Lat and lon
if (.not.allocated(var3d_nc)) then
allocate (var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),num_var_nc,n_source_nc_index,n_pollutant_loop))
var3d_nc=0.
endif
if (.not.allocated(var4d_nc)) then
allocate (var4d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index),num_var_nc,n_source_nc_index,n_pollutant_loop))
var4d_nc=0.
endif
if (.not.allocated(comp_var3d_nc)) then
allocate (comp_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),n_compound_nc_index))
comp_var3d_nc=0.
endif
if (.not.allocated(comp_var4d_nc)) then
allocate (comp_var4d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index),n_compound_nc_index))
comp_var4d_nc=0.
endif
if (.not.allocated(var1d_nc_dp)) allocate (var1d_nc_dp(maxval(dim_length_nc)))
if (.not.allocated(var2d_nc_dp)) allocate (var2d_nc_dp(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index))) !Lat and lon
if (.not.allocated(temp_var3d_nc)) allocate (temp_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index))) !Lat and lon
!if (.not.allocated(var3d_nc_dp)) allocate (var3d_nc_dp(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)))
!allocate (var4d_nc_dp(dim_length_nc(x_index),dim_length_nc(y_index),1,dim_length_nc(time_index)))
if (calculate_deposition_flag) then
if (.not.allocated(depo_var3d_nc)) then
allocate (depo_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),n_landuse_index,n_pollutant_loop))
depo_var3d_nc=0
endif
endif
if (save_emep_species.or.save_seasalt) then
if (.not.allocated(species_var3d_nc)) then
allocate (species_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),n_pmxx_sp_index,n_species_loop_index))
species_var3d_nc=0
endif
if (.not.allocated(species_temp_var3d_nc)) allocate (species_temp_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)))
endif
if (i_file.eq.2.and..not.allocated(lc_var3d_nc)) then
allocate (lc_var3d_nc(dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),num_lc_var_nc,n_source_nc_index,n_pollutant_loop))
lc_var3d_nc=0.
endif
if (i_file.eq.2.and..not.allocated(lc_var4d_nc)) then
allocate (lc_var4d_nc(dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),1,dim_length_nc(time_dim_nc_index),num_lc_var_nc,n_source_nc_index,n_pollutant_loop))
lc_var4d_nc=0.
endif
if (i_file.eq.2.and..not.allocated(pm_lc_var4d_nc)) then
allocate (pm_lc_var4d_nc(dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),1,dim_length_nc(time_dim_nc_index),num_lc_var_nc,n_source_nc_index,2))
pm_lc_var4d_nc=0.
endif
if (.not.allocated(pm_var4d_nc)) then
allocate (pm_var4d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index),num_var_nc,n_source_nc_index,2))
pm_var4d_nc=0.
endif
if (.not.allocated(pm_var3d_nc)) then
allocate (pm_var3d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index),num_var_nc,n_source_nc_index,2))
pm_var3d_nc=0.
endif
if (.not.allocated(temp_var4d_nc).and.i_file.eq.1) then
allocate (temp_var4d_nc(dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index),2))
temp_var4d_nc=0.
endif
!write(*,*) x_dim_nc_index,y_dim_nc_index
!write(*,*) shape(var1d_nc_dp)
!write(*,*) dim_length_nc
!Read in the dimensions and check values of the dimensions. Not necessary but diagnostic
do i=1,num_dims_nc
status_nc = NF90_INQ_VARID (id_nc, trim(dim_name_nc(i)), var_id_nc)
!write(*,*) id_nc, trim(dim_name_nc(i)), var_id_nc(i),dim_length_nc(i)
var1d_nc_dp=0.
!write(*,*) 'HERE',i,dim_start_nc(i),dim_length_nc(i)
unit_dim_nc(i)=''
if (status_nc .EQ. NF90_NOERR) then
status_nc = nf90_get_att(id_nc, var_id_nc, "units", unit_dim_nc(i))
status_nc = NF90_GET_VAR (id_nc, var_id_nc,var1d_nc_dp(1:dim_length_nc(i)),start=(/dim_start_nc(i)/),count=(/dim_length_nc(i)/));var1d_nc(1:dim_length_nc(i),i)=real(var1d_nc_dp(1:dim_length_nc(i)))
!write(*,*) id_nc, trim(dim_name_nc(i)), var_id_nc,dim_length_nc(i),status_nc
!Use the first file to give valid time stamps
if (i_file.eq.1.and.i.eq.time_dim_nc_index) then
val_dim_nc(1:dim_length_nc(i),i)=(var1d_nc_dp(1:dim_length_nc(i)))
valid_dim_length_nc(i)=dim_length_nc(i)
elseif (i_file.ne.1.and.i.ne.time_dim_nc_index) then
val_dim_nc(1:dim_length_nc(i),i)=(var1d_nc_dp(1:dim_length_nc(i)))
valid_dim_length_nc(i)=dim_length_nc(i)
endif
!write(*,*) val_dim_nc(1:dim_length_nc(i),i),trim(unit_dim_nc(i))
else
var1d_nc(1:dim_length_nc(i),i)=0.
val_dim_nc(1:dim_length_nc(i),i)=0.
endif
!Convert from meters to km for AROME data if necessary
if ((i.eq.x_dim_nc_index.or.i.eq.y_dim_nc_index).and.trim(unit_dim_nc(i)).eq.'km') then
write(unit_logfile,'(A)') 'Units of x y data are in kilometres. Converting to metres'
val_dim_nc(1:dim_length_nc(i),i)=val_dim_nc(1:dim_length_nc(i),i)*1000.
var1d_nc(1:dim_length_nc(i),i)=var1d_nc(1:dim_length_nc(i),i)*1000.
endif
if (i.eq.time_dim_nc_index) then
!write(unit_logfile,'(3A,2i12)') ' ',trim(dim_name_nc(i)),' (min, max in hours): ' &
! ,minval(int((var1d_nc(1:dim_length_nc(i),i)-var1d_nc(dim_start_nc(i),i))/3600.+.5)+1) &
! ,maxval(int((var1d_nc(1:divar1d_ncm_length_nc(i),i)-var1d_nc(dim_start_nc(i),i))/3600.+.5)+1)
else
write(unit_logfile,'(3A,2f12.2)') ' ',trim(dim_name_nc(i)),' (min, max): ' &
,minval(var1d_nc(1:dim_length_nc(i),i)),maxval(var1d_nc(1:dim_length_nc(i),i))
endif
enddo
!Loop through the pollutants.
do p_loop=1,n_emep_pollutant_loop+1
!Set the compound index for this pollutant
if (p_loop.le.n_emep_pollutant_loop) then
i_pollutant=pollutant_loop_index(p_loop)
p_loop_index=p_loop
else
!Special case to read in meteo data that is defined as the all_nc_index
i_pollutant=all_nc_index
!Put the meteo data in the first pollutant index always
p_loop_index=meteo_p_loop_index
endif
!Loop through the sources
do i_source=1,n_source_nc_index
!write(*,*) i_source,trim(source_file_str(i_source)),uEMEP_to_EMEP_sector(i_source),calculate_source(i_source),calculate_EMEP_source(i_source)
if (calculate_source(i_source).or.calculate_EMEP_source(i_source).or.save_EMEP_source(i_source).or.i_source.eq.allsource_index.or.(i_source.eq.extrasource_nc_index.and.use_alternative_ppm_variable_for_lf)) then
!var_name_nc(num_var_nc,n_compound_nc_index,n_source_nc_index)
!Loop through the variables
do i=1,num_var_nc
!write(*,*) i,trim(var_name_nc(i))
!if (i.eq.frac_nc_index) var_name_nc_temp=var_name_nc(i,i_pollutant,i_source)
!if (i.eq.conc_nc_index) var_name_nc_temp=var_name_nc(i,i_pollutant,i_source)
!Identify the variable name and ID in the nc file
var_name_nc_temp=var_name_nc(i,i_pollutant,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
!write(*,*) 'Status1: ',status_nc,var_id_nc,trim(var_name_nc_temp),i_source
!Exception for pm10
!if ((i.eq.conc_nc_index.or.i.eq.frac_nc_index.or.i.eq.emis_nc_index).and.i_pollutant.eq.pm10_nc_index) then
if ((i.eq.conc_nc_index.or.(i.ge.min_frac_nc_loop_index.and.i.le.max_frac_nc_loop_index).or.i.eq.emis_nc_index).and.i_pollutant.eq.pm10_nc_index) then
var_name_nc_temp=var_name_nc(i,pmco_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
!write(*,*) '-------------------',trim(var_name_nc_temp),status_nc
endif
!If a variable name is found in the file then go further
if (status_nc.eq.NF90_NOERR) then
scale_factor_nc=1.
!Find the dimensions of the variable (temp_num_dims)
status_nc = NF90_INQUIRE_VARIABLE(id_nc, var_id_nc, ndims = temp_num_dims)
!write(*,*) temp_num_dims,status_nc
if (temp_num_dims.eq.2.and.i_file.eq.1) then
!Read latitude and longitude data into a 2d grid if available. Only lat lon is 2d? Only read for file 1 assuming file 2 is the same. Problem if not
if (i.eq.lat_nc_index.or.i.eq.lon_nc_index) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, var2d_nc_dp);var2d_nc(:,:,i)=real(var2d_nc_dp)
write(unit_logfile,'(A,i3,A,2A,2f16.4)') ' Reading: ',temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(var2d_nc(:,:,i)),maxval(var2d_nc(:,:,i))
endif
elseif (temp_num_dims.eq.3.and.i_file.eq.1.and.i.eq.emis_nc_index.and.i_pollutant.eq.pm10_nc_index.and.i_source.ne.extrasource_nc_index) then
var_name_nc_temp2=var_name_nc(i,pmco_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_var3d_nc(:,:,:,i,i_source,1),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_var3d_nc(:,:,:,i,i_source,1)),maxval(pm_var3d_nc(:,:,:,i,i_source,1))
write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp2),sum(pm_var3d_nc(:,:,:,i,i_source,1))/(size(pm_var3d_nc,1)*size(pm_var3d_nc,2)*size(pm_var3d_nc,4))
var_name_nc_temp2=var_name_nc(i,pm25_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_var3d_nc(:,:,:,i,i_source,2),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_var3d_nc(:,:,:,i,i_source,2)),maxval(pm_var3d_nc(:,:,:,i,i_source,2))
write(unit_logfile,'(2A,f16.4,3i)') ' Average of: ',trim(var_name_nc_temp2),sum(pm_var3d_nc(:,:,:,i,i_source,2))/(size(pm_var3d_nc,1)*size(pm_var3d_nc,2)*size(pm_var3d_nc,4)),size(pm_var3d_nc,1),size(pm_var3d_nc,2),size(pm_var3d_nc,4)
var3d_nc(:,:,:,i,i_source,p_loop_index)=pm_var3d_nc(:,:,:,i,i_source,1)+pm_var3d_nc(:,:,:,i,i_source,2)
write(unit_logfile,'(2A,f16.4,3i)') ' Average of: ',trim(var_name_nc(i,pm10_nc_index,i_source)),sum(var3d_nc(:,:,:,i,i_source,p_loop_index))/(size(var3d_nc,1)*size(var3d_nc,2)*size(var3d_nc,4)),size(var3d_nc,1),size(var3d_nc,2),size(var3d_nc,4)
elseif (temp_num_dims.eq.3.and.i_file.eq.1) then
!write(*,'(6i)') dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index,dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, var3d_nc(:,:,:,i,i_source,p_loop_index),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
!write(*,*) status_nc
write(unit_logfile,'(A,I,A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' p_loop:',p_loop_index,' ',trim(var_name_nc_temp),' (min, max): ',minval(var3d_nc(:,:,:,i,i_source,p_loop_index)),maxval(var3d_nc(:,:,:,i,i_source,p_loop_index))
!if (i.eq.emis_nc_index) write(*,*) 'HERE',sum(var3d_nc(:,:,:,i,i_source,p_loop_index)),i_source,p_loop_index
elseif (temp_num_dims.eq.4) then
if (i_file.eq.2.and.i.eq.ZTOP_nc_index) then
!Don't try to read
elseif (i.eq.conc_nc_index.and.i_pollutant.eq.pm10_nc_index.and.i_source.ne.extrasource_nc_index) then
var_name_nc_temp2=var_name_nc(i,pmco_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_var4d_nc(:,:,dim_start_nc(z_dim_nc_index):dim_start_nc(z_dim_nc_index)+dim_length_nc(z_dim_nc_index)-1,:,i,i_source,1),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,I,A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' p_loop:',p_loop_index,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_var4d_nc(:,:,:,:,i,i_source,1)),maxval(pm_var4d_nc(:,:,:,:,i,i_source,1))
write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp2),sum(pm_var4d_nc(:,:,1,:,i,i_source,1))/(size(pm_var4d_nc,1)*size(pm_var4d_nc,2)*size(pm_var4d_nc,4))
var_name_nc_temp2=var_name_nc(i,pm25_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_var4d_nc(:,:,dim_start_nc(z_dim_nc_index):dim_start_nc(z_dim_nc_index)+dim_length_nc(z_dim_nc_index)-1,:,i,i_source,2),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,I,A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' p_loop:',p_loop_index,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_var4d_nc(:,:,:,:,i,i_source,2)),maxval(pm_var4d_nc(:,:,:,:,i,i_source,2))
write(unit_logfile,'(2A,f16.4,3i)') ' Average of: ',trim(var_name_nc_temp2),sum(pm_var4d_nc(:,:,1,:,i,i_source,2))/(size(pm_var4d_nc,1)*size(pm_var4d_nc,2)*size(pm_var4d_nc,4)),size(pm_var4d_nc,1),size(pm_var4d_nc,2),size(pm_var4d_nc,4)
var4d_nc(:,:,:,:,i,i_source,p_loop_index)=pm_var4d_nc(:,:,:,:,i,i_source,1)+pm_var4d_nc(:,:,:,:,i,i_source,2)
write(unit_logfile,'(2A,f16.4,3i)') ' Average of: ',trim(var_name_nc(i,pm10_nc_index,i_source)),sum(var4d_nc(:,:,:,:,i,i_source,p_loop_index))/(size(var4d_nc,1)*size(var4d_nc,2)*size(var4d_nc,4)),size(var4d_nc,1),size(var4d_nc,2),size(var4d_nc,4)
else
status_nc = NF90_GET_VAR (id_nc, var_id_nc, var4d_nc(:,:,dim_start_nc(z_dim_nc_index):dim_start_nc(z_dim_nc_index)+dim_length_nc(z_dim_nc_index)-1,:,i,i_source,p_loop_index),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
!status_nc = NF90_GET_VAR (id_nc, var_id_nc, temp_var4d_nc(:,:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
!var4d_nc(:,:,:,:,i,i_source)=real(temp_var4d_nc(:,:,:,:))
write(unit_logfile,'(A,I,A,I,3A,2f16.4)') ' Reading: ',temp_num_dims,' p_loop:',p_loop_index,' ',trim(var_name_nc_temp),' (min, max): ',minval(var4d_nc(:,:,:,:,i,i_source,p_loop_index)),maxval(var4d_nc(:,:,:,:,i,i_source,p_loop_index))
!if (i.eq.precip_nc_index) then
! write(*,*) maxval(var4d_nc(:,:,:,:,i,i_source,p_loop_index))
! stop
!endif
endif
!write(*,*) shape(var4d_nc)
!write(*,*) dim_start_nc(z_dim_nc_index),dim_length_nc(z_dim_nc_index)
!write(*,*) maxval(var4d_nc(:,:,1,1,i,i_source)),maxval(var4d_nc(:,:,1,2,i,i_source))
elseif (temp_num_dims.eq.6.and.i_file.eq.2) then
!if (i.eq.frac_nc_index.and.i_pollutant.eq.pm10_nc_index) then
lc_frac_nc_index=convert_frac_to_lc_frac_loop_index(i)
!write(*,*) i,lc_frac_nc_index
if (i.ge.min_frac_nc_loop_index.and.i.le.max_frac_nc_loop_index.and.i_pollutant.eq.pm10_nc_index) then
var_name_nc_temp2=var_name_nc(i,pmco_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,1),start=(/1,1,dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2I,3A,2f16.4)') ' Reading: ',i,temp_num_dims,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,1)),maxval(pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,1))
var_name_nc_temp2=var_name_nc(i,pm25_nc_index,i_source)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp2), var_id_nc)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,2),start=(/1,1,dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2I,3A,2f16.4)') ' Reading: ',i,temp_num_dims,' ',trim(var_name_nc_temp2),' (min, max): ',minval(pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,2)),maxval(pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,2))
!Not used but calculated for writing
!lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,p_loop_index)=pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,1)+pm_lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,2)
else
status_nc = NF90_GET_VAR (id_nc, var_id_nc, lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,p_loop_index),start=(/1,1,dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),dim_start_nc(time_dim_nc_index)/),count=(/dim_length_nc(xdist_dim_nc_index),dim_length_nc(ydist_dim_nc_index),dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2I,3A,2f16.4)') ' Reading: ',i,temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,p_loop_index)),maxval(lc_var4d_nc(:,:,:,:,:,:,lc_frac_nc_index,i_source,p_loop_index))
endif
!write(*,*) shape(lc_var4d_nc)
!write(*,*) maxval(lc_var4d_nc(3,3,:,:,:,1,lc_frac_nc_index,i_source)),maxval(lc_var4d_nc(3,3,:,:,:,2,lc_frac_nc_index,i_source))
else
write(unit_logfile,'(8A,8A)') ' Cannot find a correct dimension for: ',trim(var_name_nc_temp)
endif
else
!write(unit_logfile,'(8A,8A)') ' Cannot read: ',trim(var_name_nc_temp)
endif
enddo !Variable loop
endif
enddo !Source loop
!Loop through the additional compounds that are in the base file
!if (i_file.eq.1) then
i_source=allsource_index
!i=conc_nc_index
do i_loop=1,n_pollutant_compound_loop(p_loop)
i_conc=pollutant_compound_loop_index(p_loop,i_loop)
var_name_nc_temp=comp_name_nc(i_conc)
!write(*,*) p_loop,i_conc,i_source,trim(var_name_nc_temp)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
!write(*,*) 'Status1: ',status_nc,id_nc,var_id_nc,trim(var_name_nc_temp)
!If a variable name is found in the file then go further
if (status_nc.eq.NF90_NOERR) then
!Find the dimensions of the variable (temp_num_dims)
status_nc = NF90_INQUIRE_VARIABLE(id_nc, var_id_nc, ndims = temp_num_dims)
if (temp_num_dims.eq.3) then
if (i_file.eq.1) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
comp_var4d_nc(:,:,surface_level_nc,:,i_conc)=temp_var3d_nc(:,:,:)*comp_scale_nc(i_conc)
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading compound file 1: ',temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(comp_var4d_nc(:,:,surface_level_nc,:,i_conc)),maxval(comp_var4d_nc(:,:,surface_level_nc,:,i_conc))
!write(*,*) comp_var4d_nc(:,:,1,:,i_conc)
elseif (i_file.eq.2) then
!In case the comp data is in the uEMEP file then read it here with no vertical extent
status_nc = NF90_GET_VAR (id_nc, var_id_nc, temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
comp_var4d_nc(:,:,surface_level_nc,:,i_conc)=temp_var3d_nc(:,:,:)*comp_scale_nc(i_conc)
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading compound file 2: ',temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(comp_var4d_nc(:,:,surface_level_nc,:,i_conc)),maxval(comp_var4d_nc(:,:,surface_level_nc,:,i_conc))
endif
endif
if (temp_num_dims.eq.4) then
if (i_file.eq.1) then
!write(*,'(4i)') dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),temp_start_time_nc_index
!write(*,'(4i)') dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)
status_nc = NF90_GET_VAR (id_nc, var_id_nc, comp_var4d_nc(:,:,:,:,i_conc),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),dim_start_nc(z_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(z_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
comp_var4d_nc(:,:,:,:,i_conc)=comp_var4d_nc(:,:,:,:,i_conc)*comp_scale_nc(i_conc)
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading compound file 1: ',temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(comp_var4d_nc(:,:,:,:,i_conc)),maxval(comp_var4d_nc(:,:,:,:,i_conc))
elseif (i_file.eq.2) then
!In case the comp data is in the uEMEP file then read it here with no vertical extent
status_nc = NF90_GET_VAR (id_nc, var_id_nc, comp_var4d_nc(:,:,1,:,i_conc),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),1,temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),1,dim_length_nc(time_dim_nc_index)/))
comp_var4d_nc(:,:,1,:,i_conc)=comp_var4d_nc(:,:,1,:,i_conc)*comp_scale_nc(i_conc)
write(unit_logfile,'(A,I,3A,2f16.4)') ' Reading compound file 2: ',temp_num_dims,' ',trim(var_name_nc_temp),' (min, max): ',minval(comp_var4d_nc(:,:,1,:,i_conc)),maxval(comp_var4d_nc(:,:,1,:,i_conc))
endif
endif
else
write(unit_logfile,'(8A,8A)') ' Cannot read compound: ',trim(var_name_nc_temp)
endif
enddo !pollutant
enddo !compound loop
!endif
if (calculate_deposition_flag.and.i_file.eq.1) then
write(unit_logfile,'(A)') ' Reading deposition velocity data from EMEP (cm/s) and converting to m/s: '
do i_depo=1,n_landuse_index
do p_loop=1,n_emep_pollutant_loop
i_pollutant=pollutant_loop_index(p_loop)
var_name_nc_temp=deposition_name_nc(i_depo,i_pollutant)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, depo_var3d_nc(:,:,:,i_depo,p_loop),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading deposition velocity: ',trim(var_name_nc_temp),' (min, max): ',minval(depo_var3d_nc(:,:,:,i_depo,p_loop)),maxval(depo_var3d_nc(:,:,:,i_depo,p_loop))
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
!write(unit_logfile,'(8A,8A)') ' Cannot read deposition velocity: ',trim(var_name_nc_temp)
endif
enddo
enddo
!Converting to m/s
depo_var3d_nc=depo_var3d_nc/100.
endif
!Loop through the species
if ((save_emep_species.or.save_seasalt).and.i_file.eq.1) then
write(unit_logfile,'(A)') ' Reading species data from EMEP: '
do i_sp=1,n_species_loop_index
ii_sp=species_loop_index(i_sp)
if (ii_sp.eq.sp_soa_index) then
!Read a and b soa
species_temp_var3d_nc=0.
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_asoa_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,sp_asoa_index)=species_temp_var3d_nc(:,:,:)
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_bsoa_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,sp_bsoa_index)=species_temp_var3d_nc(:,:,:)
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pmxx_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pm25_sp_index,i_sp))
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp)
endif
if (ii_sp.eq.sp_sia_index) then
!Read pm10 sia but currently not using. Use the sum of PM2.5 + 0.73*NO3_course instead. This is done at the end of the sia reading
pmxx_sp_index=pm10_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_sia_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Read course NO3
pmxx_sp_index=pmco_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_no3_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Set to 0
species_var3d_nc(:,:,:,pm25_sp_index,sp_sia_index)=0.
!Read pm25(fine) no3
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_no3_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Read so4 and add to no3
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_so4_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Read nh4 and add to so4 and no3
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_nh4_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Add up the species
species_var3d_nc(:,:,:,pm25_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp) !+ 0.27*species_var3d_nc(:,:,:,pmco_sp_index,i_sp) !Not PM2.5 but PMfine
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp) + species_var3d_nc(:,:,:,pmco_sp_index,i_sp) !0.73*species_var3d_nc(:,:,:,pmco_sp_index,i_sp)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pm25_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pm25_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pm25_sp_index,i_sp))
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pm10_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp))
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(species_name_nc(pm25_sp_index,i_sp)),sum(species_var3d_nc(:,:,:,pm25_sp_index,i_sp))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(species_name_nc(pm10_sp_index,i_sp)),sum(species_var3d_nc(:,:,:,pm10_sp_index,i_sp))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
endif
if (ii_sp.eq.sp_dust_index) then
!Read dust
do pmxx_sp_index=1,n_pmxx_sp_index
if (pmxx_sp_index.eq.pm25_sp_index.or.pmco_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_dust_sah_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_dust_wb_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pmxx_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pmxx_sp_index,i_sp))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
endif
enddo
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp)+species_var3d_nc(:,:,:,pmco_sp_index,i_sp)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pm10_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp))
endif
if (ii_sp.eq.sp_seasalt_index) then
!Read seasalt
do pmxx_sp_index=1,n_pmxx_sp_index
if (pmxx_sp_index.eq.pm25_sp_index.or.pmco_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_seasalt_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
endif
enddo
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp)+species_var3d_nc(:,:,:,pmco_sp_index,i_sp)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pm10_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pm10_sp_index,i_sp))
endif
if (ii_sp.eq.sp_ffire_index) then
!Read fire
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_ffire_bc_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_ffire_rem_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
write(unit_logfile,'(A,2A,2f16.4)') ' Adding species: ',trim(species_name_nc(pmxx_sp_index,ii_sp)),' (min, max): ',minval(species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)),maxval(species_var3d_nc(:,:,:,pmxx_sp_index,i_sp))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pm25_sp_index,i_sp)
endif
if (ii_sp.eq.sp_ppm_index) then
!Read ppm
do pmxx_sp_index=1,n_pmxx_sp_index
if (pmxx_sp_index.eq.pm25_sp_index.or.pm10_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_ppm_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
endif
enddo
endif
if (ii_sp.eq.sp_water_index) then
!Read water pm25 only
pmxx_sp_index=pm25_sp_index
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_water_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!Set water in pm10 the same as pm25
species_var3d_nc(:,:,:,pm10_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)
endif
!Should there be 0.27*NO3 here for PM2.5? Check naming!!
if (ii_sp.eq.sp_pm_index) then
!Read total pm
do pmxx_sp_index=1,n_pmxx_sp_index
!if (pmxx_sp_index.eq.pm25_sp_index.or.pm10_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_pm_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!endif
enddo
endif
if (save_emep_OP_species) then
if (ii_sp.eq.sp_BBOA_index) then
!Read total pm
do pmxx_sp_index=1,n_pmxx_sp_index
!if (pmxx_sp_index.eq.pm25_sp_index.or.pm10_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_FFIRE_OM_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!endif
enddo
do pmxx_sp_index=1,n_pmxx_sp_index
!if (pmxx_sp_index.eq.pm25_sp_index.or.pm10_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_FFIRE_BC_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else
write(unit_logfile,'(8A,8A)') ' Cannot read species: ',trim(var_name_nc_temp)
endif
!endif
enddo
do pmxx_sp_index=1,n_pmxx_sp_index
!if (pmxx_sp_index.eq.pm25_sp_index.or.pm10_sp_index.eq.pmxx_sp_index) then
var_name_nc_temp=species_name_nc(pmxx_sp_index,sp_FFIRE_REM_in_index)
status_nc = NF90_INQ_VARID (id_nc, trim(var_name_nc_temp), var_id_nc)
if (status_nc.eq.NF90_NOERR) then
status_nc = NF90_GET_VAR (id_nc, var_id_nc, species_temp_var3d_nc(:,:,:),start=(/dim_start_nc(x_dim_nc_index),dim_start_nc(y_dim_nc_index),temp_start_time_nc_index/),count=(/dim_length_nc(x_dim_nc_index),dim_length_nc(y_dim_nc_index),dim_length_nc(time_dim_nc_index)/))
write(unit_logfile,'(A,2A,2f16.4)') ' Reading species: ',trim(var_name_nc_temp),' (min, max): ',minval(species_temp_var3d_nc(:,:,:)),maxval(species_temp_var3d_nc(:,:,:))
species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)=species_var3d_nc(:,:,:,pmxx_sp_index,i_sp)+species_temp_var3d_nc(:,:,:)
!write(unit_logfile,'(2A,f16.4)') ' Average of: ',trim(var_name_nc_temp),sum(species_temp_var3d_nc(:,:,:))/(size(species_temp_var3d_nc,1)*size(species_temp_var3d_nc,2)*size(species_temp_var3d_nc,3))
else