DESCRIPTION

Package: MetENP
Title: Metabolite enrichment analysis and their associated enriched pathways
Version: 0.0.0.9000
Authors@R: 
    person(given = "Kumari Sonal",
           family = "Choudhary",
           role = c("aut", "cre"),
           email = "kschoudhary@eng.ucsd.edu",
           comment = c(ORCID = "YOUR-ORCID-ID"))
Description: This enrichment pipeline perfoms metabolic enrichment analysis. Essentially, it takes metabolite information (names or names and concentration along with metadata information) and provides: 1) enrichment score of metabolite class, 2) maps to pathway of the species of choice, 3) calculate enrichment score of pathways, 4) Plots the pathways and shows the metabolite increase or decrease,5) gets gene info, reaction info, and enzyme info.
biocViews:
Imports:
	plyr,
	dplyr,
	tidyr,
	purrr,
	tidygraph,
	KEGGREST,
	KEGGgraph,
	pathview,
	reshape2,
	ggplot2,
	ggrepel,
	igraph,
	ggraph,
	httr,
	stringr,
	jsonlite,
	rjson,
	tidyverse,
	magrittr,
	data.table,
	curl,
	sjmisc,
	tictoc
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests: 
    knitr,
    rmarkdown,
    MASS,
    nlme,
    testthat
VignetteBuilder: knitr