pyproject.toml

[build-system]
requires = ["setuptools>=42.0.0", "wheel", "setuptools_scm"]
build-backend = "setuptools.build_meta"


[tool.setuptools_scm]
write_to = "src/cell_gater/_version.py"

[tool.black]
line-length = 120
target-version = ['py38', 'py39', 'py310']


[tool.ruff]
line-length = 120
lint.select = [
    "D", # flake8-docstrings
    "I", # isort
    "E", # pycodestyle
    "F", # pyflakes
    "W", # pycodestyle
    "Q", # flake8-quotes
    "SIM", # flake8-simplify
    "TID",  # flake-8-tidy-imports
    "NPY",  # NumPy-specific rules
    "PT",  # flake8-pytest-style
    "B", # flake8-bugbear
    "UP", # pyupgrade
    "C4", # flake8-comprehensions
    "BLE", # flake8-blind-except
    "T20",  # flake8-print
    "RET", # flake8-raise
]
lint.ignore = [
    "E501", # line too long. let black handle this
    "D100", # Missing docstring in public module
    "UP006", "UP007", # type annotation. As using magicgui require runtime type annotation then we disable this.
    "SIM117", # flake8-simplify - some of merged with statements are not looking great with black, reanble after drop python 3.9
    "D104", # Missing docstring in public package
]
lint.unfixable = ["B", "UP", "C4", "BLE", "T20", "RET"]

exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".mypy_cache",
    ".pants.d",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
    "*vendored*",
    "*_vendor*",
]

target-version = "py38"

[tool.ruff.lint.per-file-ignores]
    "*/__init__.py" = ["F401"]

[tool.ruff.lint.pydocstyle]
convention = "numpy"