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virmet covplot for viruses with a segmented genome #46

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sschmutz opened this issue Mar 11, 2019 · 1 comment
Open

virmet covplot for viruses with a segmented genome #46

sschmutz opened this issue Mar 11, 2019 · 1 comment

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@sschmutz
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Because viruses with a segmented genome share the same ssciname in orgs_list.tsv it's only possible to make a coverage plot of one of the segments.

If one could (alternatively) use stitle for the --organism argument, it would be possible to distinguish between the different segments.

criterion = orgs_list.loc[:, 'ssciname'].str.startswith(org_name).fillna(False)

@MaryamZaheri
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We can either replace stitle instead of ssciname for all next runs or I can add a parameter to specify that one would like to use stitle instead of ssciname for the current run.

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