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environment-detailed.yml
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environment-detailed.yml
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name: SmaltAlign
channels:
- bioconda
- r
- defaults
- conda-forge
dependencies:
- _r-mutex=1.0.0=anacondar_1
- bambamc=0.0.50=ha92aebf_2
- bzip2=1.0.6=h14c3975_1002
- ca-certificates=2019.3.9=hecc5488_0
- cairo=1.14.12=h80bd089_1005
- certifi=2019.3.9=py36_0
- curl=7.61.0=h93b3f91_2
- fontconfig=2.13.1=he4413a7_1000
- freebayes=1.2.0=py36h56106d0_4
- freetype=2.10.0=he983fc9_0
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.56.2=had28632_1001
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.2.1=h0c605f7_3
- harfbuzz=1.9.0=he243708_1001
- htslib=1.9=h47928c2_5
- icu=58.2=hf484d3e_1000
- jpeg=9c=h14c3975_1001
- krb5=1.14.6=0
- libdeflate=1.0=h14c3975_1
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=8.2.0=hdf63c60_1
- libgfortran=3.0.0=1
- libiconv=1.15=h516909a_1005
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.0=h1ad7b7a_1003
- libstdcxx-ng=8.2.0=hdf63c60_1
- libtiff=4.0.10=h648cc4a_1001
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_0
- lofreq=2.1.3.1=py36_0
- ncurses=6.1=hf484d3e_1002
- openssl=1.0.2r=h14c3975_0
- pango=1.40.14=hf0c64fd_1003
- parallel=20160622=1
- pcre=8.41=hf484d3e_1003
- perl=5.26.2=h516909a_1006
- perl-threaded=5.26.0=0
- pip=19.1=py36_0
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- python=3.6.7=hd21baee_1002
- r=3.4.1=r3.4.1_0
- r-ade4=1.7_13=r341hc070d10_0
- r-assertthat=0.2.0=r3.4.1_0
- r-base=3.4.1=h4fe35fd_8
- r-bh=1.62.0_1=r3.4.1_0
- r-bindr=0.1=r3.4.1_0
- r-bindrcpp=0.2=r3.4.1_0
- r-boot=1.3_19=r3.4.1_0
- r-class=7.3_14=r3.4.1_0
- r-cluster=2.0.6=r3.4.1_0
- r-codetools=0.2_15=r3.4.1_0
- r-colorspace=1.3_2=r3.4.1_0
- r-cowplot=0.9.3=r341h6115d3f_1
- r-dichromat=2.0_0=r3.4.1_2
- r-digest=0.6.12=r3.4.1_0
- r-dplyr=0.7.0=r3.4.1_0
- r-foreign=0.8_68=r3.4.1_0
- r-ggplot2=2.2.1=r3.4.1_0
- r-glue=1.1.1=r3.4.1_0
- r-gtable=0.2.0=r3.4.1_0
- r-hms=0.3=r3.4.1_0
- r-kernsmooth=2.23_15=r3.4.1_0
- r-labeling=0.3=r3.4.1_2
- r-lattice=0.20_35=r3.4.1_0
- r-lazyeval=0.2.0=r3.4.1_0
- r-magrittr=1.5=r3.4.1_2
- r-mass=7.3_47=r3.4.1_0
- r-matrix=1.2_10=r3.4.1_0
- r-mgcv=1.8_17=r3.4.1_0
- r-munsell=0.4.3=r3.4.1_0
- r-nlme=3.1_131=r3.4.1_0
- r-nnet=7.3_12=r3.4.1_0
- r-pkgconfig=2.0.1=r3.4.1_0
- r-plogr=0.1_1=r3.4.1_0
- r-plyr=1.8.4=r3.4.1_0
- r-r6=2.2.1=r3.4.1_0
- r-rcolorbrewer=1.1_2=r3.4.1_3
- r-rcpp=0.12.11=r3.4.1_0
- r-readr=1.1.1=r3.4.1_0
- r-recommended=3.4.1=r3.4.1_0
- r-reshape2=1.4.2=r3.4.1_0
- r-rlang=0.1.1=r3.4.1_0
- r-rpart=4.1_11=r3.4.1_0
- r-scales=0.4.1=r3.4.1_0
- r-segmented=0.5_3.0=r341h6115d3f_0
- r-seqinr=3.4_5=r3.4.1_0
- r-spatial=7.3_11=r3.4.1_0
- r-stringi=1.1.5=r3.4.1_0
- r-stringr=1.2.0=r3.4.1_0
- r-survival=2.41_3=r3.4.1_0
- r-tibble=1.3.3=r3.4.1_0
- r-tidyr=0.6.3=r3.4.1_0
- readline=7.0=hf8c457e_1001
- samtools=1.9=h91753b0_8
- seqtk=1.3=h84994c4_1
- setuptools=41.0.1=py36_0
- smalt=0.7.6=1
- sqlite=3.26.0=h67949de_1001
- tk=8.6.9=h84994c4_1001
- vcflib=1.0.0_rc2=h56106d0_2
- velvet=1.2.10=h470a237_2
- wheel=0.33.1=py36_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h516909a_1004
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.7=h14c3975_1000
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.1.5=h14c3975_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h14c3975_1004
prefix: /opt/miniconda/envs/SmaltAlign