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<h1 id="The-Joy-of-Topic-Modeling">The Joy of Topic Modeling<a class="anchor-link" href="#The-Joy-of-Topic-Modeling">¶</a></h1>
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<h2 id="Matt-Burton-(@mcburton)">Matt Burton (@mcburton)<a class="anchor-link" href="#Matt-Burton-(@mcburton)">¶</a></h2><ul>
<li>Visiting Assistant Professor </li>
<li>SIS & ULS</li>
<li>PhD from Michigan</li>
<li>Studied Digital Humanities Blogs</li>
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<h1 id="The-Plan">The Plan<a class="anchor-link" href="#The-Plan">¶</a></h1>
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<li>What you do before you start topic modeling</li>
<li>An intro to generative topic models</li>
<li>What comes out the other end</li>
<li>Then we'll do a thing!</li>
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<h1 id="What-is-topic-modeling?">What <strong>is</strong> topic modeling?<a class="anchor-link" href="#What-is-topic-modeling?">¶</a></h1>
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<h3 id="A-method-for-finding-latent-patterns-of-co-occurance-within-large-amounts-of-data-(most-often,-but-not-always,-text)">A method for finding <em>latent</em> patterns of co-occurance within large amounts of data (most often, but not always, text)<a class="anchor-link" href="#A-method-for-finding-latent-patterns-of-co-occurance-within-large-amounts-of-data-(most-often,-but-not-always,-text)">¶</a></h3>
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<h3 id=""Distant-Reading"---Franco-Moretti">"Distant Reading" - Franco Moretti<a class="anchor-link" href="#"Distant-Reading"---Franco-Moretti">¶</a></h3>
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<h3 id=""Macroanalysis"---Matthew-Jockers">"Macroanalysis" - Matthew Jockers<a class="anchor-link" href="#"Macroanalysis"---Matthew-Jockers">¶</a></h3>
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<h3 id=""non-consumptive-reading"---some-lawyer">"non-consumptive reading" - some lawyer<a class="anchor-link" href="#"non-consumptive-reading"---some-lawyer">¶</a></h3>
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<h1 id="Topic-modeling-is-not-magic">Topic modeling is <em>not</em> magic<a class="anchor-link" href="#Topic-modeling-is-not-magic">¶</a></h1>
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<h1 id="What-do-I-mean-when-I-say-"words?"">What do I mean when I say "words?"<a class="anchor-link" href="#What-do-I-mean-when-I-say-"words?"">¶</a></h1>
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<h1 id="Words-are-transformed-into-numbers">Words are transformed into numbers<a class="anchor-link" href="#Words-are-transformed-into-numbers">¶</a></h1>
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<h2 id="Documents-and-sentences-are-broken-down-and-chopped-up-into-little-units-called-tokens,-or-unigrams(or-ngrams).">Documents and sentences are broken down and chopped up into little units called tokens, or unigrams(or ngrams).<a class="anchor-link" href="#Documents-and-sentences-are-broken-down-and-chopped-up-into-little-units-called-tokens,-or-unigrams(or-ngrams).">¶</a></h2>
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<h2 id="“digital-humanities”-could-be-a-bigram-or-two-individual-unigrams,-“digital”-and-“humanities.”">“digital humanities” could be a bigram or two individual unigrams, “digital” and “humanities.”<a class="anchor-link" href="#“digital-humanities”-could-be-a-bigram-or-two-individual-unigrams,-“digital”-and-“humanities.”">¶</a></h2>
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<h1 id="Stopwords-are-removed">Stopwords are removed<a class="anchor-link" href="#Stopwords-are-removed">¶</a></h1>
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<h2 id=""and",-"but",-or-"or"">"and", "but", or "or"<a class="anchor-link" href="#"and",-"but",-or-"or"">¶</a></h2>
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<h1 id=""to-be-or-not-to-be"">"to be or not to be"<a class="anchor-link" href="#"to-be-or-not-to-be"">¶</a></h1>
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<h1 id="Stemming">Stemming<a class="anchor-link" href="#Stemming">¶</a></h1>
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<h2 id="Are-“model”-and-“models”--separate-tokens-or-do-we-want-to-treat-them-as-one-token?">Are “model” and “models” separate tokens or do we want to treat them as one token?<a class="anchor-link" href="#Are-“model”-and-“models”--separate-tokens-or-do-we-want-to-treat-them-as-one-token?">¶</a></h2>
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<h1 id="We-typically-don't-use-stemming-when-topic-modeling">We typically don't use stemming when topic modeling<a class="anchor-link" href="#We-typically-don't-use-stemming-when-topic-modeling">¶</a></h1>
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<h1 id="What-Do-I-mean-when-I-say-"document?"">What Do I mean when I say "document?"<a class="anchor-link" href="#What-Do-I-mean-when-I-say-"document?"">¶</a></h1>
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<h1 id="A-document-is-a-bag-of-words">A document is a bag of words<a class="anchor-link" href="#A-document-is-a-bag-of-words">¶</a></h1>
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<div class=" highlight hl-ipython3"><pre><span class="n">doc_one</span> <span class="o">=</span> <span class="s">"John likes to watch movies. Mary likes movies too."</span>
<span class="n">doc_two</span> <span class="o">=</span> <span class="s">"John also likes to watch football games."</span>
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<div class=" highlight hl-ipython3"><pre><span class="c"># the corpus dictionary</span>
<span class="p">{</span>
<span class="s">"John"</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
<span class="s">"likes"</span><span class="p">:</span> <span class="mi">2</span><span class="p">,</span>
<span class="s">"to"</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span>
<span class="s">"watch"</span><span class="p">:</span> <span class="mi">4</span><span class="p">,</span>
<span class="s">"movies"</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span>
<span class="s">"also"</span><span class="p">:</span> <span class="mi">6</span><span class="p">,</span>
<span class="s">"football"</span><span class="p">:</span> <span class="mi">7</span><span class="p">,</span>
<span class="s">"games"</span><span class="p">:</span> <span class="mi">8</span><span class="p">,</span>
<span class="s">"Mary"</span><span class="p">:</span> <span class="mi">9</span><span class="p">,</span>
<span class="s">"too"</span><span class="p">:</span> <span class="mi">10</span>
<span class="p">}</span>
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<div class=" highlight hl-ipython3"><pre><span class="c"># the vector representation</span>
<span class="n">doc_one_as_vec</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span>
<span class="n">doc_two_as_vec</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span>
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<h1 id="The-vector-representation-is-what-the-computer-chews-on-when-topic-modeling">The vector representation is what the computer chews on when topic modeling<a class="anchor-link" href="#The-vector-representation-is-what-the-computer-chews-on-when-topic-modeling">¶</a></h1>
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<h1 id="In-Topic-Modeling,-documents-are-composed-from-a-mixture-of-"topics"">In Topic Modeling, documents are composed from a <em>mixture</em> of "topics"<a class="anchor-link" href="#In-Topic-Modeling,-documents-are-composed-from-a-mixture-of-"topics"">¶</a></h1>
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<h1 id="OK,-so-what-is-a-"topic?"">OK, so what is a "topic?"<a class="anchor-link" href="#OK,-so-what-is-a-"topic?"">¶</a></h1>
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<h1 id="A-"topic"-is-a-probability-distribution-over-words">A "topic" is a probability distribution over words<a class="anchor-link" href="#A-"topic"-is-a-probability-distribution-over-words">¶</a></h1>
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<h1 id="Basically-a-topic-is-a-bag-that-contains-all-of-the-words,-but-more-of-some-words-than-others">Basically a topic is a bag that contains all of the words, but more of some words than others<a class="anchor-link" href="#Basically-a-topic-is-a-bag-that-contains-all-of-the-words,-but-more-of-some-words-than-others">¶</a></h1>
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<h1 id="OK,-no-we-can-talk-about-models!">OK, no we can talk about models!<a class="anchor-link" href="#OK,-no-we-can-talk-about-models!">¶</a></h1>
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<h1 id="The-technical-term-for-topic-modeling-is-Latent-Dirichlet-Allocation-or-LDA">The technical term for topic modeling is Latent Dirichlet Allocation or LDA<a class="anchor-link" href="#The-technical-term-for-topic-modeling-is-Latent-Dirichlet-Allocation-or-LDA">¶</a></h1>
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<h1 id="LDA-models-a-generative-process">LDA models a <em>generative</em> process<a class="anchor-link" href="#LDA-models-a-generative-process">¶</a></h1>
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<li>Select a set of K topics from a probability distribution </li>
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<h1 id="Basically-you-"author"-a-document-by-repeatedly-selected-a-word-token-from-a-series-of-different-bags-of-words">Basically you "author" a document by repeatedly selected a word token from a series of different bags-of-words<a class="anchor-link" href="#Basically-you-"author"-a-document-by-repeatedly-selected-a-word-token-from-a-series-of-different-bags-of-words">¶</a></h1>
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<h1 id="What-I've-just-described-is-not-what-actually-happens-when-you-do-topic-modeling-(it-is-merely-the-process-being-modeled)">What I've just described is <em>not</em> what actually happens when you <em>do</em> topic modeling (it is merely the process being modeled)<a class="anchor-link" href="#What-I've-just-described-is-not-what-actually-happens-when-you-do-topic-modeling-(it-is-merely-the-process-being-modeled)">¶</a></h1>
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<h1 id="Computering,-or-more-technically-"estimating"-these-numbers-with-MATH-is-what-happens-when-you-do-topic-modeling">Computering, or more technically "estimating" these numbers with MATH is what happens when you <em>do</em> topic modeling<a class="anchor-link" href="#Computering,-or-more-technically-"estimating"-these-numbers-with-MATH-is-what-happens-when-you-do-topic-modeling">¶</a></h1>
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<h1 id="The-parameters-(the-various-bags-of-words)-must-be-estimated">The parameters (the various bags-of-words) must be <em>estimated</em><a class="anchor-link" href="#The-parameters-(the-various-bags-of-words)-must-be-estimated">¶</a></h1><p><img src="estimating.png" alt="Estimating the model"></p>
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<h1 id="The-"parameters"-of-the-model-are-the-N-topic-distributions-and-each-document's-topic-mixture">The "parameters" of the model are the <em>N</em> topic distributions and each document's topic mixture<a class="anchor-link" href="#The-"parameters"-of-the-model-are-the-N-topic-distributions-and-each-document's-topic-mixture">¶</a></h1>
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<h1 id="There-are-multiple-ways-to-estimate-the-parameters-using-fancy-math.">There are multiple ways to estimate the parameters using <em>fancy math.</em><a class="anchor-link" href="#There-are-multiple-ways-to-estimate-the-parameters-using-fancy-math.">¶</a></h1><h2 id=""Variational-Inference"-&-"Gibbs-Sampling",-are-the-most-common.">"Variational Inference" & "Gibbs Sampling", are the most common.<a class="anchor-link" href="#"Variational-Inference"-&-"Gibbs-Sampling",-are-the-most-common.">¶</a></h2><h2 id="MALLET-uses-Gibbs-Sampling.-This-is-a-great-video-of-David-Mimno-explaining-how-it-works">MALLET uses Gibbs Sampling. <a href="http://journalofdigitalhumanities.org/2-1/the-details-by-david-mimno/">This is a great video of David Mimno explaining how it works</a><a class="anchor-link" href="#MALLET-uses-Gibbs-Sampling.-This-is-a-great-video-of-David-Mimno-explaining-how-it-works">¶</a></h2>
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<h1 id="The-big-pile-of-numbers-you-get-after-you-run-MALLET,-those-are-the-estimated-parameters,-the-distributions-the-model-would-use-to-generate-the-corpus-you-have.">The big pile of numbers you get after you run MALLET, those are the estimated parameters, the distributions the model would use to generate the corpus you have.<a class="anchor-link" href="#The-big-pile-of-numbers-you-get-after-you-run-MALLET,-those-are-the-estimated-parameters,-the-distributions-the-model-would-use-to-generate-the-corpus-you-have.">¶</a></h1>
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<h1 id="Analysis">Analysis<a class="anchor-link" href="#Analysis">¶</a></h1>
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<h1 id="Reading-these-parameters-are-what-scholars-use-to-"distantly-read"-a-corpus.">Reading these parameters are what scholars use to "distantly read" a corpus.<a class="anchor-link" href="#Reading-these-parameters-are-what-scholars-use-to-"distantly-read"-a-corpus.">¶</a></h1>
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<h1 id="Many-scholars-focus-on-the-list-of-top-words-for-each-of-the-k-topic-distributions">Many scholars focus on the list of top words for each of the k topic distributions<a class="anchor-link" href="#Many-scholars-focus-on-the-list-of-top-words-for-each-of-the-k-topic-distributions">¶</a></h1>
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<div class=" highlight hl-ipython3"><pre><span class="mi">0</span> <span class="mf">2.5</span> <span class="n">science</span> <span class="n">network</span> <span class="n">networks</span> <span class="n">scientific</span> <span class="n">analysis</span> <span class="n">research</span> <span class="n">history</span> <span class="n">social</span> <span class="n">data</span> <span class="n">study</span> <span class="n">publication</span> <span class="n">juggling</span> <span class="n">statistics</span> <span class="n">published</span> <span class="n">information</span> <span class="n">natural</span> <span class="n">time</span> <span class="n">ideas</span> <span class="n">sorts</span>
<span class="mi">1</span> <span class="mf">2.5</span> <span class="n">students</span> <span class="n">learning</span> <span class="n">education</span> <span class="n">student</span> <span class="n">experience</span> <span class="n">teaching</span> <span class="n">model</span> <span class="n">college</span> <span class="k">class</span> <span class="nc">building</span> <span class="n">courses</span> <span class="n">ve</span> <span class="n">free</span> <span class="n">thinking</span> <span class="n">general</span> <span class="n">teach</span> <span class="n">graduate</span> <span class="n">approach</span> <span class="n">business</span>
<span class="mi">2</span> <span class="mf">2.5</span> <span class="n">words</span> <span class="n">word</span> <span class="n">figure</span> <span class="n">collection</span> <span class="n">results</span> <span class="n">literary</span> <span class="n">common</span> <span class="n">language</span> <span class="n">capitalism</span> <span class="n">good</span> <span class="n">interesting</span> <span class="n">corpus</span> <span class="n">lot</span> <span class="n">appears</span> <span class="n">love</span> <span class="n">case</span> <span class="n">period</span> <span class="n">similar</span> <span class="n">women</span>
<span class="mi">3</span> <span class="mf">2.5</span> <span class="n">archives</span> <span class="n">day</span> <span class="n">archival</span> <span class="n">viagra</span> <span class="n">archivists</span> <span class="n">society</span> <span class="n">cancer</span> <span class="n">conference</span> <span class="n">information</span> <span class="n">studies</span> <span class="n">heart</span> <span class="n">web</span> <span class="n">american</span> <span class="n">archive</span> <span class="n">treatment</span> <span class="n">prostate</span> <span class="n">october</span> <span class="n">mid</span> <span class="n">blood</span>
<span class="mi">4</span> <span class="mf">2.5</span> <span class="n">tr</span> <span class="n">report</span> <span class="n">link</span> <span class="n">hcil</span> <span class="n">html</span> <span class="n">shneiderman</span> <span class="n">cs</span> <span class="n">version</span> <span class="n">published</span> <span class="n">umiacs</span> <span class="n">acm</span> <span class="n">plaisant</span> <span class="n">information</span> <span class="n">computer</span> <span class="n">human</span> <span class="n">conference</span> <span class="n">car</span> <span class="n">video</span> <span class="n">proc</span>
<span class="mi">5</span> <span class="mf">2.5</span> <span class="n">history</span> <span class="n">project</span> <span class="n">music</span> <span class="n">american</span> <span class="n">research</span> <span class="n">virginia</span> <span class="n">war</span> <span class="n">center</span> <span class="n">university</span> <span class="n">workshop</span> <span class="n">civil</span> <span class="n">part</span> <span class="n">america</span> <span class="n">asian</span> <span class="n">freedom</span> <span class="n">events</span> <span class="n">archive</span> <span class="n">summer</span> <span class="n">september</span>
<span class="mi">6</span> <span class="mf">2.5</span> <span class="n">digital</span> <span class="n">humanities</span> <span class="n">work</span> <span class="n">dh</span> <span class="n">scholarship</span> <span class="n">scholars</span> <span class="n">projects</span> <span class="n">scholarly</span> <span class="n">review</span> <span class="n">tools</span> <span class="n">ways</span> <span class="n">project</span> <span class="n">critical</span> <span class="n">criticism</span> <span class="n">technology</span> <span class="n">field</span> <span class="n">process</span> <span class="n">discourse</span> <span class="n">peer</span>
<span class="mi">7</span> <span class="mf">2.5</span> <span class="n">topic</span> <span class="n">topics</span> <span class="n">documents</span> <span class="n">modeling</span> <span class="n">models</span> <span class="n">model</span> <span class="n">http</span> <span class="n">april</span> <span class="n">crowdsourcing</span> <span class="n">analysis</span> <span class="n">mallet</span> <span class="n">words</span> <span class="n">accessed</span> <span class="n">document</span> <span class="n">text</span> <span class="n">antiquities</span> <span class="n">lda</span> <span class="n">network</span> <span class="nb">set</span>
<span class="mi">8</span> <span class="mf">2.5</span> <span class="n">history</span> <span class="n">book</span> <span class="n">human</span> <span class="n">historians</span> <span class="n">historical</span> <span class="n">technology</span> <span class="n">big</span> <span class="n">century</span>
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<h1 id="There-is-a-tension-interpreting-these-clusters-of-top-words.-Are-they-meaningful-clusters-or-artifacts-of-the-model?-of-bad-data?">There is a tension interpreting these clusters of top words. Are they meaningful clusters or artifacts of the model? of bad data?<a class="anchor-link" href="#There-is-a-tension-interpreting-these-clusters-of-top-words.-Are-they-meaningful-clusters-or-artifacts-of-the-model?-of-bad-data?">¶</a></h1>
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<div class=" highlight hl-ipython3"><pre><span class="mi">3</span> <span class="mf">2.5</span> <span class="n">archives</span> <span class="n">day</span> <span class="n">archival</span> <span class="n">viagra</span> <span class="n">archivists</span> <span class="n">society</span> <span class="n">cancer</span> <span class="n">conference</span> <span class="n">information</span> <span class="n">studies</span> <span class="n">heart</span> <span class="n">web</span> <span class="n">american</span> <span class="n">archive</span> <span class="n">treatment</span> <span class="n">prostate</span> <span class="n">october</span> <span class="n">mid</span> <span class="n">blood</span>
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<h1 id="This-is-why-it-is-really-important-to-go-back-to-the-original-documents-and,-if-possible,-check-your-validity-against-some-external-source">This is why it is really important to go back to the original documents and, if possible, check your validity against some external source<a class="anchor-link" href="#This-is-why-it-is-really-important-to-go-back-to-the-original-documents-and,-if-possible,-check-your-validity-against-some-external-source">¶</a></h1>
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<h2 id="Ryan-Heuser-and-Long-Le-Khac-did-a-good-job-of-this-in-the-Stanford-Literary-Lab-Pamphlet-#4---"A-Quantitative-Literary-History-of-2,958-Nineteenth-Century-British-Novels:-The-Semantic-Cohort-Method"">Ryan Heuser and Long Le-Khac did a good job of this in the Stanford Literary Lab Pamphlet #4 - <em>"A Quantitative Literary History of 2,958 Nineteenth-Century British Novels: The Semantic Cohort Method"</em><a class="anchor-link" href="#Ryan-Heuser-and-Long-Le-Khac-did-a-good-job-of-this-in-the-Stanford-Literary-Lab-Pamphlet-#4---"A-Quantitative-Literary-History-of-2,958-Nineteenth-Century-British-Novels:-The-Semantic-Cohort-Method"">¶</a></h2><h2 id="Also-see-Alan-Liu's-discussion-of-this-article-in-his-PMLA-article-"The-Meaning-of-the-Digital-Humanities"">Also see Alan Liu's discussion of this article in his PMLA article <em>"The Meaning of the Digital Humanities"</em><a class="anchor-link" href="#Also-see-Alan-Liu's-discussion-of-this-article-in-his-PMLA-article-"The-Meaning-of-the-Digital-Humanities"">¶</a></h2>
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<p><img src="dh-blog-map-small.jpeg" alt="My network of topics visualization"></p>
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<li><p>Andrew Goldstone & Ted Underwood's <a href="http://agoldst.github.io/dfr-browser/demo/#">dfr-browser</a></p>
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<li><p>Michael Nelson's <a href="http://dsl.richmond.edu/dispatch/">Mining the Dispatch</a></p>
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<li><p>Lisa Rhody's <a href="http://www.lisarhody.com/revising-ekphrasis/">Revising Ekphrasis</a></p>
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<h1 id="Great-Tutorials">Great Tutorials<a class="anchor-link" href="#Great-Tutorials">¶</a></h1><ul>
<li><a href="http://programminghistorian.org/lessons/topic-modeling-and-mallet">Getting Started with Topic Modeling and MALLET from the programing historian</a> </li>
<li><a href="http://journalofdigitalhumanities.org/2-1/">Journal of Digital Humanities issue on Topic Modeling</a></li>
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<div class=" highlight hl-ipython3"><pre><span class="o">!</span>ipython nbconvert intro-to-topic-modeling.ipynb --to slides --post serve
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<pre>[NbConvertApp] Converting notebook intro-to-topic-modeling.ipynb to slides
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