Main.tex

% uWaterloo Thesis Template for LaTeX 
% Last Updated May 24, 2011 by Stephen Carr, IST Client Services
% FOR ASSISTANCE, please send mail to rt-IST-CSmathsci@ist.uwaterloo.ca

% Effective October 2006, the University of Waterloo 
% requires electronic thesis submission. See the uWaterloo thesis regulations at
% http://www.grad.uwaterloo.ca/Thesis_Regs/thesistofc.asp.

% DON'T FORGET TO ADD YOUR OWN NAME AND TITLE in the "hyperref" package
% configuration below. THIS INFORMATION GETS EMBEDDED IN THE PDF FINAL PDF DOCUMENT.
% You can view the information if you view Properties of the PDF document.

% Many faculties/departments also require one or more printed
% copies. This template attempts to satisfy both types of output. 
% It is based on the standard "book" document class which provides all necessary 
% sectioning structures and allows multi-part theses.

% DISCLAIMER
% To the best of our knowledge, this template satisfies the current uWaterloo requirements.
% However, it is your responsibility to assure that you have met all 
% requirements of the University and your particular department.
% Many thanks to the feedback from many graduates that assisted the development of this template.

% -----------------------------------------------------------------------

% By default, output is produced that is geared toward generating a PDF 
% version optimized for viewing on an electronic display, including 
% hyperlinks within the PDF.
 
% E.g. to process a thesis called "mythesis.tex" based on this template, run:

% pdflatex mythesis	-- first pass of the pdflatex processor
% bibtex mythesis	-- generates bibliography from .bib data file(s) 
% pdflatex mythesis	-- fixes cross-references, bibliographic references, etc
% pdflatex mythesis	-- fixes cross-references, bibliographic redeferences, etc

% If you use the recommended LaTeX editor, Texmaker, you would open the mythesis.tex
% file, then click the pdflatex button. Then run BibTeX (under the Tools menu).
% Then click the pdflatex button two more times. If you have an index as well,
% you'll need to run MakeIndex from the Tools menu as well, before running pdflatex
% the last two times.

% N.B. The "pdftex" program allows graphics in the following formats to be
% included with the "\includegraphics" command: PNG, PDF, JPEG, TIFF
% Tip 1: Generate your figures and photos in the size you want them to appear
% in your thesis, rather than scaling them with \includegraphics options.
% Tip 2: Any drawings you do should be in scalable vector graphic formats:
% SVG, PNG, WMF, EPS and then converted to PNG or PDF, so they are scalable in
% the final PDF as well.
% Tip 3: Photographs should be cropped and compressed so as not to be too large.

% To create a PDF output that is optimized for double-sided printing: 
%
% 1) comment-out the \documentclass statement in the preamble below, and
% un-comment the second \documentclass line.
%
% 2) change the value assigned below to the boolean variable
% "PrintVersion" from "false" to "true".

% --------------------- Start of Document Preamble -----------------------

% Specify the document class, default style attributes, and page dimensions
% For hyperlinked PDF, suitable for viewing on a computer, use this:
\documentclass[letterpaper,12pt,titlepage, english, openright]{book}
\usepackage{afterpage}

\newcommand\blankpage{%
	\null
	\thispagestyle{empty}%
	\addtocounter{page}{-1}%
	\newpage}
\setcounter{secnumdepth}{3}  %% Avec un numero.
\setcounter{tocdepth}{2}   
 \hyphenation{op-tical net-works semi-conduc-tor}
 \usepackage[linesnumbered,ruled,vlined]{algorithm2e}
 \usepackage[pdftex]{graphicx} 
 %\usepackage{stfloats}
 \usepackage{cite}
 \usepackage[cmex10]{amsmath}
 \usepackage{algorithmic}
 \usepackage{multirow}
 %\fnbelowfloat
 \usepackage[tight,footnotesize]{subfigure}
 \usepackage{listings}
 \usepackage{color}
 \usepackage{url}
 \definecolor{dkgreen}{rgb}{0,0.6,0}
 \definecolor{gray}{rgb}{0.5,0.5,0.5}
 \definecolor{mauve}{rgb}{0.58,0,0.82}
 \usepackage{multirow}
 \usepackage{booktabs}
 \usepackage{amsthm}
 \usepackage{hhline}
 \newtheorem*{remark}{Limitations}
 \usepackage{calc}
 \usepackage{amssymb}
 \usepackage{epstopdf}
 \lstset{frame=tb,
 	language=Java,
 	aboveskip=3mm,
 	belowskip=3mm,
 	showstringspaces=false,
 	columns=flexible,
 	basicstyle={\small\ttfamily},
 	numbers=none,
 	numberstyle=\tiny\color{gray},
 	keywordstyle=\color{blue},
 	commentstyle=\color{dkgreen},
 	stringstyle=\color{mauve},
 	tabsize=3
 }
 %\usepackage{titlesec}
\usepackage{float}
 \usepackage{placeins}
 \setcounter{topnumber}{10}
 \setcounter{bottomnumber}{10}
 \setcounter{totalnumber}{10}
 \renewcommand{\floatpagefraction}{.9}
 \renewcommand{\textfraction}{.2}
 \DeclareGraphicsExtensions{.pdf,.png,.jpg,.mps} 
 \usepackage{lipsum}
 
 \usepackage{etoolbox}
 \usepackage{fancyhdr}
 \usepackage{kantlipsum}
% For PDF, suitable for double-sided printing, change the PrintVersion variable below
% to "true" and use this \documentclass line instead of the one above:
%\documentclass[letterpaper,12pt,titlepage,openright,twoside,final]{book}

% Some LaTeX commands I define for my own nomenclature.
% If you have to, it's better to change nomenclature once here than in a 
% million places throughout your thesis!
\newcommand{\package}[1]{\textbf{#1}} % package names in bold text
\newcommand{\cmmd}[1]{\textbackslash\texttt{#1}} % command name in tt font 
\newcommand{\href}[1]{#1} 
\newcommand{\ie}{\emph{i.e.}\xspace}
\newcommand{\eg}{\emph{e.g.}}
\newcommand{\cf}{\emph{cf.}}
\newcommand{\etal}{\emph{et al.}\xspace}

% does nothing, but defines the command so the
    % print-optimized version will ignore \href tags (redefined by hyperref pkg).
%\newcommand{\texorpdfstring}[2]{#1} % does nothing, but defines the command
% Anything defined here may be redefined by packages added below...

% This package allows if-then-else control structures.
\usepackage{ifthen}
\newboolean{PrintVersion}
\setboolean{PrintVersion}{true}


% CHANGE THIS VALUE TO "true" as necessary, to improve printed results for hard copies
% by overriding some options of the hyperref package below.

%\usepackage{nomencl} % For a nomenclature (optional; available from ctan.org)
\usepackage{amsmath,amssymb,amstext} % Lots of math symbols and environments
\usepackage[pdftex]{graphicx} % For including graphics N.B. pdftex graphics driver 

% Hyperlinks make it very easy to navigate an electronic document.
% In addition, this is where you should specify the thesis title
% and author as they appear in the properties of the PDF document.
% Use the "hyperref" package 
% N.B. HYPERREF MUST BE THE LAST PACKAGE LOADED; ADD ADDITIONAL PKGS ABOVE
\usepackage[pdftex,letterpaper=true,pagebackref=false]{hyperref} % with basic options
		% N.B. pagebackref=true provides links back from the References to the body text. This can cause trouble for printing.
\hypersetup{
    plainpages=false,       % needed if Roman numbers in frontpages
    pdfpagelabels=true,     % adds page number as label in Acrobat's page count
    bookmarks=true,         % show bookmarks bar?
    unicode=false,          % non-Latin characters in Acrobat’s bookmarks
    pdftoolbar=true,        % show Acrobat’s toolbar?
    pdfmenubar=true,        % show Acrobat’s menu?
    pdffitwindow=false,     % window fit to page when opened
    pdfstartview={FitH},    % fits the width of the page to the window
    pdftitle={Mohamed BOUSSAA PhD Thesis},    % title: CHANGE THIS TEXT!
%    pdfauthor={Author},    % author: CHANGE THIS TEXT! and uncomment this line
%    pdfsubject={Subject},  % subject: CHANGE THIS TEXT! and uncomment this line
%    pdfkeywords={keyword1} {key2} {key3}, % list of keywords, and uncomment this line if desired
    pdfnewwindow=true,      % links in new window
    colorlinks=true,        % false: boxed links; true: colored links
    linkcolor=blue,         % color of internal links
    citecolor=green,        % color of links to bibliography
    filecolor=magenta,      % color of file links
    urlcolor=cyan           % color of external links
}
 

% Setting up the page margins...
% uWaterloo thesis requirements specify a minimum of 1 inch (72pt) margin at the
% top, bottom, and outside page edges and a 1.125 in. (81pt) gutter
% margin (on binding side). While this is not an issue for electronic
% viewing, a PDF may be printed, and so we have the same page layout for
% both printed and electronic versions, we leave the gutter margin in.
% Set margins to minimum permitted by uWaterloo thesis regulations:
\setlength{\marginparwidth}{0pt} % width of margin notes
% N.B. If margin notes are used, you must adjust \textwidth, \marginparwidth
% and \marginparsep so that the space left between the margin notes and page
% edge is less than 15 mm (0.6 in.)
\setlength{\marginparsep}{0pt} % width of space between body text and margin notes
\setlength{\evensidemargin}{0.125in} % Adds 1/8 in. to binding side of all 
% even-numbered pages when the "twoside" printing option is selected
\setlength{\oddsidemargin}{0.125in} % Adds 1/8 in. to the left of all pages
% when "oneside" printing is selected, and to the left of all odd-numbered
% pages when "twoside" printing is selected
\setlength{\textwidth}{6.375in} % assuming US letter paper (8.5 in. x 11 in.) and 
% side margins as above
\raggedbottom

% The following statement specifies the amount of space between
% paragraphs. Other reasonable specifications are \bigskipamount and \smallskipamount.
\setlength{\parskip}{\medskipamount}

% The following statement controls the line spacing.  The default
% spacing corresponds to good typographic conventions and only slight
% changes (e.g., perhaps "1.2"), if any, should be made.
\renewcommand{\baselinestretch}{1} % this is the default line space setting

% By default, each chapter will start on a recto (right-hand side)
% page.  We also force each section of the front pages to start on 
% a recto page by inserting \cleardoublepage commands.
% In many cases, this will require that the verso page be
% blank and, while it should be counted, a page number should not be
% printed.  The following statements ensure a page number is not
% printed on an otherwise blank verso page.
\let\origdoublepage\cleardoublepage
\newcommand{\clearemptydoublepage}{%
  \clearpage{\pagestyle{empty}\origdoublepage}}
\let\cleardoublepage\clearemptydoublepage

%======================================================================
%   L O G I C A L    D O C U M E N T -- the content of your thesis
%======================================================================
%=========================GPCEEEEEEEEEEEE
\newcommand{\cL}{{\cal L}}

\setlength{\oddsidemargin}{15pt} % Marge gauche sur pages impaires
\setlength{\evensidemargin}{-15pt} % Marge gauche sur pages paires 


\usepackage{standalone}

\usepackage[table]{xcolor}
\usepackage{hhline}

\hyphenation{op-tical net-works semi-conduc-tor}
\usepackage[linesnumbered,ruled,vlined]{algorithm2e}
\usepackage[pdftex]{graphicx}
\usepackage{siunitx}
\sisetup{binary-units = true}

%\usepackage{stfloats}
%\usepackage{cite}
\usepackage{amsthm}
 
\usepackage{algorithmic}
\usepackage{multirow}
%\fnbelowfloat
\usepackage[tight,footnotesize]{subfigure}
\usepackage{listings}
\usepackage{color}
\usepackage{url}
\definecolor{dkgreen}{rgb}{0,0.6,0}
\definecolor{gray}{rgb}{0.5,0.5,0.5}
\definecolor{mauve}{rgb}{0.58,0,0.82}

\lstset{frame=tb,
	language=Java,
	aboveskip=3mm,
	belowskip=3mm,
	showstringspaces=false,
	columns=flexible,
	basicstyle={\small\ttfamily},
	numbers=none,
	numberstyle=\tiny\color{gray},
	keywordstyle=\color{blue},
	commentstyle=\color{dkgreen},
	stringstyle=\color{mauve},
	tabsize=3
}


\setcounter{topnumber}{10}
\setcounter{bottomnumber}{10}
\setcounter{totalnumber}{10}
\renewcommand{\floatpagefraction}{.9}
\renewcommand{\textfraction}{.2}
\DeclareGraphicsExtensions{.pdf,.png,.jpg,.mps} 

\usepackage{amsthm}
\newtheorem*{mydef}{Definition}

\renewcommand{\floatpagefraction}{.9}
\renewcommand{\textfraction}{.1}
\renewcommand{\topfraction}{.8}
\renewcommand{\bottomfraction}{.8}
\newcommand*{\tabref}[1]{\tablename~\ref{#1}}
\newcommand*{\figref}[1]{\figurename~\ref{#1}}




%% choix des profondeurs de section pour la table des matières
%% 2= subsection, 3=subsubsection
\setcounter{secnumdepth}{3}  %% Avec un numero.
\setcounter{tocdepth}{2}     %% Visibles dans la table des matieres
\makeindex %% crée l'index
\usepackage{pdfpages}


\usepackage{subfigure}
\usepackage{graphicx}

\usepackage{todonotes}
\usepackage{changes}
\definechangesauthor[name={Gerson Sunyé}, color=orange]{gs}

\usepackage{fancyhdr}
\fancyhead{}
\fancyfoot{}
\renewcommand{\headrulewidth}{0pt}
\fancyhead[RO,LE]{\footnotesize\thepage}
\fancyhead[RE]{\footnotesize\slshape\leftmark}
\pagestyle{fancy}

\usepackage{hyperref}
\usepackage{acronym}
\usepackage[acronym,nomain]{glossaries}


% Generate the glossary
\makeglossaries
\begin{document}

%\addtocounter{page}{-1}%ça c'est pour revenir 

\includepdf{CoverPage/couverture-latex.pdf}

%~\cleardoublepage


%\remerciements
\frontmatter
\input{./Acknowledgements/Acknowledgements}
\tableofcontents%%{Table des matières}

\input{Introduction/IntroductionFr.tex}
\mainmatter
\chapter[Introduction]{Introduction}\label{chap:intro}
\input{Introduction/Introduction.tex}
\part{Background and State of the Art}
\chapter[Background]{Background}\label{chap:background}
\input{Background/Background.tex}
\chapter[State of the art]{State of the art}\label{chap:SOTA}
\input{SOTA/SOTA.tex}
\part{Contributions}
\chapter*{To the reader: summary of contributions}\label{chap:summary}
\addcontentsline{toc}{chapter}{To the reader: summary of contributions}
\input{chapitre0/chapitre0.tex}
\chapter[Automatic non-functional testing of code generator families]{Automatic non-functional testing of code generator families}\label{chap:code generators}
%\begin{flushleft}
\input{chapitre4/chapitre4.tex}
%\end{flushleft}
\chapter[NOTICE: An approach for auto-tuning compilers]{NOTICE: An approach for auto-tuning compilers}\label{chap:compilers}
\input{chapitre3/chapitre3.tex}
\chapter{A lightweight execution environment for automatic generators testing }\label{chap:docker}
\input{chapitre5/chapitre5.tex}
\part{Conclusion and Perspectives}
\chapter[Conclusion and perspectives]{Conclusion and perspectives}\label{chap:conclusion}
\input{Conclusion/Conclusion.tex}










%----------------------------------------------------------------------
% END MATERIAL
%----------------------------------------------------------------------

% B I B L I O G R A P H Y
% -----------------------

% The following statement selects the style to use for references.  It controls the sort order of the entries in the bibliography and also the formatting for the in-text labels.
\bibliographystyle{alpha}
% This specifies the location of the file containing the bibliographic information.  
% It assumes you're using BibTeX (if not, why not?).
\cleardoublepage % This is needed if the book class is used, to place the anchor in the correct page,
                 % because the bibliography will start on its own page.
                 % Use \clearpage instead if the document class uses the "oneside" argument
\phantomsection  % With hyperref package, enables hyperlinking from the table of contents to bibliography             
% The following statement causes the title "References" to be used for the bibliography section:
\renewcommand*{\bibname}{References}

% Add the References to the Table of Contents
\addcontentsline{toc}{chapter}{\textbf{References}}


\bibliography{uw-ethesis}
% Tip 5: You can create multiple .bib files to organize your references. 
% Just list them all in the \bibliogaphy command, separated by commas (no spaces).

% The following statement causes the specified references to be added to the bibliography% even if they were not 
% cited in the text. The asterisk is a wildcard that causes all entries in the bibliographic database to be included (optional).
\nocite{*}

\newpage
\cleardoublepage
\phantomsection \label{listoffigs}
\addcontentsline{toc}{chapter}{List of Figures}
\markboth{List of Figures}{List of Figures}
\listoffigures

\newpage
\phantomsection \label{listoftabs}
\addcontentsline{toc}{chapter}{List of Tables}
\markboth{List of Tables}{List of Tables}
\listoftables
\afterpage{\blankpage}
%\input{acronym.tex}
\includepdf{acronym/acronym.pdf}

\end{document}