From f29280c7f126228bfb47c6a5cc67b2b5b6ff8cc1 Mon Sep 17 00:00:00 2001 From: "katarzyna.otylia.sikora@gmail.com" Date: Wed, 20 Dec 2023 14:38:41 +0100 Subject: [PATCH] test dag --- .ci_stuff/test_dag.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh index 932afaeb7..47afea079 100755 --- a/.ci_stuff/test_dag.sh +++ b/.ci_stuff/test_dag.sh @@ -346,7 +346,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 807 ]; then exit 1 ; fi WC=`ATAC-seq -d BAM_input --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --peakCaller HMMRATAC .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 789 ]; then exit 1 ; fi WC=`ATAC-seq -d BAM_input --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --maxFragmentSize 120 --qval 0.1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` -if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 527 ]; then exit 1 ; fi +if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 686 ]; then exit 1 ; fi WC=`ATAC-seq -d BAM_input --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --fromBAM BAM_input/filtered_bam/ .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 869 ]; then exit 1 ; fi