From d42b681689099152135c86262457575668a5da99 Mon Sep 17 00:00:00 2001
From: WardDeb <ward@deboutte.be>
Date: Thu, 8 Aug 2024 22:57:41 +0200
Subject: [PATCH] replace regex as it evokes syntax warning

---
 snakePipes/shared/rules/createIndices.snakefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/snakePipes/shared/rules/createIndices.snakefile b/snakePipes/shared/rules/createIndices.snakefile
index d06a12853..e4f72080c 100755
--- a/snakePipes/shared/rules/createIndices.snakefile
+++ b/snakePipes/shared/rules/createIndices.snakefile
@@ -54,7 +54,7 @@ else:
         params:
             spikeinExt = spikeinExt
         shell: """
-            sed -r 's/\s+/{spikeinExt} /' {input} > {output}
+            sed -r 's/[[:space:]]+/{spikeinExt} /' {input} > {output}
         """
 
     rule createGenomeFasta: