From a5ca314e5d1fd1bf2d0f314b9c651127d54b968e Mon Sep 17 00:00:00 2001 From: "katarzyna.otylia.sikora@gmail.com" Date: Tue, 19 Dec 2023 14:01:24 +0100 Subject: [PATCH] test dag --- .ci_stuff/test_dag.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh index 53374e6d4..166cb506a 100755 --- a/.ci_stuff/test_dag.sh +++ b/.ci_stuff/test_dag.sh @@ -296,7 +296,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2518 ]; then exit 1 ; fi WC=`mRNA-seq -m allelic-mapping,deepTools_qc -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2539 ]; then exit 1 ; fi WC=`mRNA-seq -m allelic-mapping,deepTools_qc,alignment-free -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" --VCFfile allelic_input/file.vcf.gz --strains strain1 .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` -if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 2304 ]; then exit 1 ; fi +if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 3294 ]; then exit 1 ; fi WC=`noncoding-RNA-seq -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v "conda installation\|Conda environment" | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 968 ]; then exit 1 ; fi