From 847d1bf50cd600d75282ace5243f4631e6c34357 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Tue, 13 Aug 2024 11:07:25 +0200 Subject: [PATCH] ignore temp files removal in ci_test test --- .ci_stuff/test_dag.sh | 2 +- .ci_stuff/test_ignore_patterns.txt | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh index 60f726d48..ed54be9b2 100755 --- a/.ci_stuff/test_dag.sh +++ b/.ci_stuff/test_dag.sh @@ -368,7 +368,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1338 ]; then exit 1 ; fi #WC=`scRNAseq -i PE_input -o output --mode Gruen --snakemakeOptions " --dryrun --conda-prefix /tmp" --skipRaceID --splitLib .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | wc -l` #if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1015 ]; then exit 1 ; fi WC=`scRNAseq -i PE_input -o output --mode STARsolo --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | wc -l` -if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1651 ]; then exit 1 ; fi +if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1642 ]; then exit 1 ; fi WC=`scRNAseq -i PE_input -o output --mode STARsolo --skipVelocyto --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | wc -l` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1485 ]; then exit 1 ; fi WC=`scRNAseq -i PE_input -o output --mode Alevin --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | wc -l` diff --git a/.ci_stuff/test_ignore_patterns.txt b/.ci_stuff/test_ignore_patterns.txt index 67b5cd49a..7e1c64be7 100644 --- a/.ci_stuff/test_ignore_patterns.txt +++ b/.ci_stuff/test_ignore_patterns.txt @@ -6,4 +6,5 @@ Execute sanitize_local_storage_copies tracemalloc wildcard_constraints -SyntaxWarning: invalid escape sequence \ No newline at end of file +SyntaxWarning: invalid escape sequence +Woud remove temporary \ No newline at end of file