diff --git a/.ci_stuff/test_dag.sh b/.ci_stuff/test_dag.sh index 402aa786a..34bea6c47 100755 --- a/.ci_stuff/test_dag.sh +++ b/.ci_stuff/test_dag.sh @@ -378,7 +378,7 @@ if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 604 ]; then exit 1 ; fi # WGBS WC=`WGBS -i PE_input -o output --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l ` -if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1300 ]; then exit 1 ; fi +if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1327 ]; then exit 1 ; fi WC=`WGBS -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l ` if [ ${PIPESTATUS[0]} -ne 0 ] || [ $WC -ne 1343 ]; then exit 1 ; fi WC=`WGBS -i PE_input -o output --sampleSheet .ci_stuff/test_sampleSheet.tsv --aligner bwameth2 --snakemakeOptions " --dryrun --conda-prefix /tmp" .ci_stuff/organism.yaml | tee >(cat 1>&2) | grep -v -f .ci_stuff/test_ignore_patterns.txt | sed '/^\s*$/d' | sed '/^host:/d' | wc -l `