From dba1f1ab29bcbee8b1efe49d4d0f24daf79cdd6d Mon Sep 17 00:00:00 2001 From: Allison Horst Date: Sun, 19 Mar 2023 11:51:20 -0700 Subject: [PATCH] CRAN resubmission updates (#83) * CRAN resubmission updates * removing vignette builder field since there are no more vignettes * fixing an error in the documentation * fixing an error in the hbr documentation as of #73 * fixing typo in and documentation as of #76 --------- Co-authored-by: Allison Horst Co-authored-by: Julien Brun --- DESCRIPTION | 5 +- R/and_vertebrates_doc.R | 4 +- R/arc_weather_doc.R | 2 +- R/hbr_maples_doc.R | 4 +- R/knz_bison_doc.R | 2 +- R/luq_streamchem_doc.R | 2 +- R/ntl_airtemp_doc.R | 2 +- R/ntl_icecover_doc.R | 2 +- R/nwt_pikas_doc.R | 2 +- R/pie_crab_doc.R | 2 +- README.Rmd | 8 +- README.md | 512 ++++++++++++++++++++++++++++++++++++---- man/and_vertebrates.Rd | 4 +- man/arc_weather.Rd | 2 +- man/hbr_maples.Rd | 4 +- man/knz_bison.Rd | 2 +- man/luq_streamchem.Rd | 2 +- man/ntl_airtemp.Rd | 2 +- man/ntl_icecover.Rd | 2 +- man/nwt_pikas.Rd | 2 +- man/pie_crab.Rd | 2 +- 21 files changed, 488 insertions(+), 81 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 4e6e0b1..e91c51f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: lterdatasampler -Title: Educational dataset examples from the Long Term Ecological Research program +Title: Educational Dataset Examples from the Long Term Ecological Research Program Version: 0.1.1 -Date: 2020-08-01 +Date: 2023-03-18 Authors@R: c( person(given = "Allison", family = "Horst", @@ -62,4 +62,3 @@ Suggests: gt URL: https://github.com/lter/lterdatasampler BugReports: https://github.com/lter/lterdatasampler/issues -VignetteBuilder: knitr diff --git a/R/and_vertebrates_doc.R b/R/and_vertebrates_doc.R index cd44a91..38301b8 100644 --- a/R/and_vertebrates_doc.R +++ b/R/and_vertebrates_doc.R @@ -17,10 +17,10 @@ #' \item{length_1_mm}{a number denoting vertebrate length in millimeters; total or snout-fork length for trout, and snout-vent length for salamanders} #' \item{length_2_mm}{a number denoting snout-tail length in millimeters (for Coastal giant salamander only)} #' \item{weight_g}{a number denoting vertebrate mass in grams} -#' \item{clip}{a character denoting the fin clip type for cutthroat trout, ended in 2006 (LV = left ventrical fin; LVRV = left and right ventrical fins; RV = right ventrical fin; NONE = no ventral fin clip)} +#' \item{clip}{a character denoting the fin clip type for cutthroat trout, ended in 2006 (LV = left ventral fin; LVRV = left and right ventral fins; RV = right ventral fin; NONE = no ventral fin clip)} #' \item{sampledate}{a date denoting the date of observation} #' \item{notes}{a character denoting additional comments} #' } #' @source {Gregory, S.V. and I. Arismendi. 2020. Aquatic Vertebrate Population Study in Mack Creek, Andrews Experimental Forest, 1987 to present ver 14. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/7c78d662e847cdbe33584add8f809165} +#' \doi{10.6073/pasta/7c78d662e847cdbe33584add8f809165} "and_vertebrates" diff --git a/R/arc_weather_doc.R b/R/arc_weather_doc.R index 4eec6ee..091c0d3 100644 --- a/R/arc_weather_doc.R +++ b/R/arc_weather_doc.R @@ -10,7 +10,7 @@ #' \item{daily_precip}{a number denoting total daily precipitation in millimeters} #' \item{mean_windspeed}{a number denoting daily mean windspeed in meters per second} #' } -#' @source {Shaver, G. 2019. A multi-year DAILY weather file for the Toolik Field Station at Toolik Lake, AK starting 1988 to present. ver 4. Environmental Data Initiative.} \url{https://doi.org/10.6073/pasta/ce0f300cdf87ec002909012abefd9c5c} +#' @source {Shaver, G. 2019. A multi-year DAILY weather file for the Toolik Field Station at Toolik Lake, AK starting 1988 to present. ver 4. Environmental Data Initiative.} \doi{10.6073/pasta/ce0f300cdf87ec002909012abefd9c5c} #' @source {Arctic LTER website:} \url{https://arc-lter.ecosystems.mbl.edu/} "arc_weather" diff --git a/R/hbr_maples_doc.R b/R/hbr_maples_doc.R index 4b1f100..72571a0 100644 --- a/R/hbr_maples_doc.R +++ b/R/hbr_maples_doc.R @@ -6,7 +6,7 @@ #' \describe{ #' \item{year}{a number denoting the year that the sample was taken} #' \item{watershed}{a factor denoting the watershed where the sample was collected; W1 = calcium-treated, Reference = reference} -#' \item{elevation}{a factor describing the sample staion where the fecal sample was collected} +#' \item{elevation}{a factor describing the Elevation of transect; Low = low elevation, Mid = mid elevation} #' \item{transect}{a factor denoting the transect number within the watershed} #' \item{sample}{a factor denoting the sample number within transect. There are twenty samples in each transect} #' \item{stem_length}{a number denoting the height of the seedling in millimeters} @@ -17,6 +17,6 @@ #' \item{corrected_leaf_area}{a number denoting the area of both leaves in addition to the area removed for chlorophyll measurements in square centimeters} #' } #' @source {Juice, S. and T. Fahey. 2019. Health and mycorrhizal colonization response of sugar maple (Acer saccharum) seedlings to calcium addition in Watershed 1 at the Hubbard Brook Experimental Forest ver 3. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/0ade53ede9a916a36962799b2407097e} +#' \doi{10.6073/pasta/0ade53ede9a916a36962799b2407097e} "hbr_maples" diff --git a/R/knz_bison_doc.R b/R/knz_bison_doc.R index 057b988..3777b89 100644 --- a/R/knz_bison_doc.R +++ b/R/knz_bison_doc.R @@ -14,6 +14,6 @@ #' \item{animal_yob}{a number denoting the year animal was born} #' } #' @source {EBlair, J. 2021. CBH01 Konza Prairie bison herd information ver 12. Environmental Data Initiative. https://doi.org/10.6073/pasta/9c641b35695abc5889edd64c3950517f (Accessed 2021-05-10).} -#' \url{https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-knz.78.12} +#' \doi{10.6073/pasta/9c641b35695abc5889edd64c3950517f} "knz_bison" diff --git a/R/luq_streamchem_doc.R b/R/luq_streamchem_doc.R index 384ee09..732a935 100644 --- a/R/luq_streamchem_doc.R +++ b/R/luq_streamchem_doc.R @@ -24,5 +24,5 @@ #' \item{TSS}{a number denoting the Total Suspended Sediments in mg/L} #' } #' @source {McDowell, W. 2021. Chemistry of stream water from the Luquillo Mountains ver 4923056. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/0a09f5aa2e6f11451553c92b102279a6} +#' \doi{10.6073/pasta/0a09f5aa2e6f11451553c92b102279a6} "luq_streamchem" diff --git a/R/ntl_airtemp_doc.R b/R/ntl_airtemp_doc.R index 58855dd..ccc917c 100644 --- a/R/ntl_airtemp_doc.R +++ b/R/ntl_airtemp_doc.R @@ -10,5 +10,5 @@ #' } #' @source {Anderson, L. and D. Robertson. 2020. Madison Wisconsin Daily Meteorological Data 1869 - current ver 32. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/e3ff85971d817e9898bb8a83fb4c3a8b} +#' \doi{10.6073/pasta/e3ff85971d817e9898bb8a83fb4c3a8b} "ntl_airtemp" diff --git a/R/ntl_icecover_doc.R b/R/ntl_icecover_doc.R index 4c9191d..fc77400 100644 --- a/R/ntl_icecover_doc.R +++ b/R/ntl_icecover_doc.R @@ -12,7 +12,7 @@ #' \item{year}{a number denoting the year of observation} #' } #' @source {Magnuson, J.J., S.R. Carpenter, and E.H. Stanley. 2021. North Temperate Lakes LTER: Ice Duration - Madison Lakes Area 1853 - current ver 35. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/ab31f2489ee436beb73fc8f1d0213d97} +#' \doi{10.6073/pasta/ab31f2489ee436beb73fc8f1d0213d97} "ntl_icecover" diff --git a/R/nwt_pikas_doc.R b/R/nwt_pikas_doc.R index d0da61c..5b5ce4f 100644 --- a/R/nwt_pikas_doc.R +++ b/R/nwt_pikas_doc.R @@ -14,6 +14,6 @@ #' \item{elev_m}{a number denoting the elevation in meters of the sampling station where the fecal sample was collected} #' } #' @source {Whipple, A. and Niwot Ridge LTER. 2020. Physiological stress of American pika (Ochotona princeps) and associated habitat characteristics for Niwot Ridge, 2018 - 2019 ver 1. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/9f95baf55f98732f47a8844821ff690d} +#' \doi{10.6073/pasta/9f95baf55f98732f47a8844821ff690d} "nwt_pikas" diff --git a/R/pie_crab_doc.R b/R/pie_crab_doc.R index e18aea3..0f01fc2 100644 --- a/R/pie_crab_doc.R +++ b/R/pie_crab_doc.R @@ -15,5 +15,5 @@ #' \item{name}{full name of research site; LTER, Long-Term Ecological Research site; NERR, National Estuarine Research Reserve} #' } #' @source {Johnson, D. 2019. Fiddler crab body size in salt marshes from Florida to Massachusetts, USA at PIE and VCR LTER and NOAA NERR sites during summer 2016. ver 1. Environmental Data Initiative.} -#' \url{https://doi.org/10.6073/pasta/4c27d2e778d3325d3830a5142e3839bb} +#' \doi{10.6073/pasta/4c27d2e778d3325d3830a5142e3839bb} "pie_crab" diff --git a/README.Rmd b/README.Rmd index cee06e0..0e7b769 100644 --- a/README.Rmd +++ b/README.Rmd @@ -29,7 +29,7 @@ Site](https://github.com/lter/lterdatasampler/workflows/pkgdown/badge.svg)](http -# lterdatasampler +# lterdatasampler The mission of the [Long Term Ecological Research program (LTER) Network](https://lternet.edu/) is to “*provide the scientific community, @@ -54,7 +54,7 @@ We encourage you to explore existing LTER [teaching and training initiatives](https://lternet.edu/education-and-training/), and the **many** other available LTER datasets which can be accessed via the [Environmental Data -Initiative](https://environmentaldatainitiative.org/). Please contact +Initiative](https://edirepository.org). Please contact cited researchers directly to discuss using data for research purposes or in publication. @@ -73,7 +73,7 @@ remotes::install_github("lter/lterdatasampler") Dataset samples currently included in the package are summarized below; see individual Articles for data and source details. Note: the three letter prefix for each dataset indicates the LTER site (see full list of -site abbreviations [here](https://lternet.edu/site/)). +[site abbreviations](https://lternet.edu/site/)). - [`and_vertebrates`](https://lter.github.io/lterdatasampler/reference/and_vertebrates.html): Records for aquatic vertebrates (cutthroat trout and salamanders) in @@ -174,7 +174,7 @@ People / organizations who supported this project: - LTER Education Committee - All the LTER Researchers and Site PIs - Cyber-infrastructures: - [EDI](https://environmentaldatainitiative.org/) and + [EDI](https://edirepository.org/) and [DataONE](https://www.dataone.org/) We gratefully acknowledge all authors and contributors of the diff --git a/README.md b/README.md index f98d6ac..d560b76 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ Site](https://github.com/lter/lterdatasampler/workflows/pkgdown/badge.svg)](http -# lterdatasampler +# lterdatasampler The mission of the [Long Term Ecological Research program (LTER) Network](https://lternet.edu/) is to “*provide the scientific community, @@ -31,10 +31,9 @@ research and should only be used for teaching purposes**. We encourage you to explore existing LTER [teaching and training initiatives](https://lternet.edu/education-and-training/), and the **many** other available LTER datasets which can be accessed via the -[Environmental Data -Initiative](https://environmentaldatainitiative.org/). Please contact -cited researchers directly to discuss using data for research purposes -or in publication. +[Environmental Data Initiative](https://edirepository.org). Please +contact cited researchers directly to discuss using data for research +purposes or in publication. ## Installation @@ -51,34 +50,34 @@ remotes::install_github("lter/lterdatasampler") Dataset samples currently included in the package are summarized below; see individual Articles for data and source details. Note: the three letter prefix for each dataset indicates the LTER site (see full list of -site abbreviations [here](https://lternet.edu/site/)). +[site abbreviations](https://lternet.edu/site/)). - - [`and_vertebrates`](https://lter.github.io/lterdatasampler/reference/and_vertebrates.html): +- [`and_vertebrates`](https://lter.github.io/lterdatasampler/reference/and_vertebrates.html): Records for aquatic vertebrates (cutthroat trout and salamanders) in Mack Creek, Andrews Experimental Forest, Oregon (1987 - present) - - [`arc_weather`](https://lter.github.io/lterdatasampler/reference/arc_weather.html): +- [`arc_weather`](https://lter.github.io/lterdatasampler/reference/arc_weather.html): Daily meteorological (e.g. air temperature, precipitation) records from Toolik Field Station, Alaska (1988 - present) - - [`hbr_maples`](https://lter.github.io/lterdatasampler/reference/hbr_maples.html): +- [`hbr_maples`](https://lter.github.io/lterdatasampler/reference/hbr_maples.html): Sugar maple seedlings at Hubbard Brook Experimental Forest (New Hampshire) in calcium-treated and reference watersheds in August 2003 and June 2004 - - [`knz_bison`](https://lter.github.io/lterdatasampler/reference/knz_bison.html): +- [`knz_bison`](https://lter.github.io/lterdatasampler/reference/knz_bison.html): Bison masses recorded for the herd at Konza Prairie Biological Station LTER - - [`luq_streamchem`](https://lter.github.io/lterdatasampler/reference/luq_streamchem.html): +- [`luq_streamchem`](https://lter.github.io/lterdatasampler/reference/luq_streamchem.html): stream chemistry data for the Quebrada Sonadora (QS) location part of the Luqillo tropical forest LTER site - - [`ntl_icecover`](https://lter.github.io/lterdatasampler/reference/ntl_icecover.html): +- [`ntl_icecover`](https://lter.github.io/lterdatasampler/reference/ntl_icecover.html): Ice freeze and thaw dates for Madison, Wisconsin Area lakes (1853 - 2019), North Temperate Lakes LTER - - [`ntl_airtemp`](https://lter.github.io/lterdatasampler/reference/ntl_airtemp.html): +- [`ntl_airtemp`](https://lter.github.io/lterdatasampler/reference/ntl_airtemp.html): Daily average air temperature data for Madison, Wisconsin (1869 - 2019), North Temperate Lakes LTER - - [`nwt_pikas`](https://lter.github.io/lterdatasampler/reference/nwt_pikas.html): +- [`nwt_pikas`](https://lter.github.io/lterdatasampler/reference/nwt_pikas.html): Pika observations for habitat and stress analysis at Niwot Ridge LTER, Colorado - - [`pie_crab`](https://lter.github.io/lterdatasampler/reference/pie_crab.html): +- [`pie_crab`](https://lter.github.io/lterdatasampler/reference/pie_crab.html): Fiddler crab body size recorded summer 2016 in salt marshes from Florida to Massachusetts including Plum Island Ecosystem LTER, Virginia Coast LTER, and NOAA’s National Estuarine Research Reserve @@ -92,52 +91,462 @@ statistics courses. In the table below, we list some introductory methods / skills, then share which data samples in this package we think are well-suited to use -when teaching or learning them\! It is not comprehensive - there are +when teaching or learning them! It is not comprehensive - there are *many* different analyses & skills that these data samples would facilitate. Here we highlight a few that we think would be commonly useful +
+ - + - - - + + + - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -148,7 +557,7 @@ useful The best way to provide feedback on this package is to open an [issue](https://github.com/lter/lterdatasampler/issues) and assign the -`feedback` label. Thank you\! +`feedback` label. Thank you! ## Acknowledgements @@ -160,12 +569,11 @@ Thank you also go to their Course Advisor Prof. Sang-yun Oh. People / organizations who supported this project: - - LTER Network Office - - LTER Information Managers - - LTER Education Committee - - All the LTER Researchers and Site PIs - - Cyber-infrastructures: - [EDI](https://environmentaldatainitiative.org/) and +- LTER Network Office +- LTER Information Managers +- LTER Education Committee +- All the LTER Researchers and Site PIs +- Cyber-infrastructures: [EDI](https://edirepository.org/) and [DataONE](https://www.dataone.org/) We gratefully acknowledge all authors and contributors of the diff --git a/man/and_vertebrates.Rd b/man/and_vertebrates.Rd index 4b9814c..6cbd4ae 100644 --- a/man/and_vertebrates.Rd +++ b/man/and_vertebrates.Rd @@ -20,14 +20,14 @@ A tibble with 32,209 rows and 16 variables: \item{length_1_mm}{a number denoting vertebrate length in millimeters; total or snout-fork length for trout, and snout-vent length for salamanders} \item{length_2_mm}{a number denoting snout-tail length in millimeters (for Coastal giant salamander only)} \item{weight_g}{a number denoting vertebrate mass in grams} -\item{clip}{a character denoting the fin clip type for cutthroat trout, ended in 2006 (LV = left ventrical fin; LVRV = left and right ventrical fins; RV = right ventrical fin; NONE = no ventral fin clip)} +\item{clip}{a character denoting the fin clip type for cutthroat trout, ended in 2006 (LV = left ventral fin; LVRV = left and right ventral fins; RV = right ventral fin; NONE = no ventral fin clip)} \item{sampledate}{a date denoting the date of observation} \item{notes}{a character denoting additional comments} } } \source{ {Gregory, S.V. and I. Arismendi. 2020. Aquatic Vertebrate Population Study in Mack Creek, Andrews Experimental Forest, 1987 to present ver 14. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/7c78d662e847cdbe33584add8f809165} +\doi{10.6073/pasta/7c78d662e847cdbe33584add8f809165} } \usage{ and_vertebrates diff --git a/man/arc_weather.Rd b/man/arc_weather.Rd index 6ad9900..693467d 100644 --- a/man/arc_weather.Rd +++ b/man/arc_weather.Rd @@ -15,7 +15,7 @@ A tibble with 11,171 rows and 5 variables: } } \source{ -{Shaver, G. 2019. A multi-year DAILY weather file for the Toolik Field Station at Toolik Lake, AK starting 1988 to present. ver 4. Environmental Data Initiative.} \url{https://doi.org/10.6073/pasta/ce0f300cdf87ec002909012abefd9c5c} +{Shaver, G. 2019. A multi-year DAILY weather file for the Toolik Field Station at Toolik Lake, AK starting 1988 to present. ver 4. Environmental Data Initiative.} \doi{10.6073/pasta/ce0f300cdf87ec002909012abefd9c5c} {Arctic LTER website:} \url{https://arc-lter.ecosystems.mbl.edu/} } diff --git a/man/hbr_maples.Rd b/man/hbr_maples.Rd index 7d75282..74af28a 100644 --- a/man/hbr_maples.Rd +++ b/man/hbr_maples.Rd @@ -9,7 +9,7 @@ A tibble with 359 rows and 11 variables \describe{ \item{year}{a number denoting the year that the sample was taken} \item{watershed}{a factor denoting the watershed where the sample was collected; W1 = calcium-treated, Reference = reference} -\item{elevation}{a factor describing the sample staion where the fecal sample was collected} +\item{elevation}{a factor describing the Elevation of transect; Low = low elevation, Mid = mid elevation} \item{transect}{a factor denoting the transect number within the watershed} \item{sample}{a factor denoting the sample number within transect. There are twenty samples in each transect} \item{stem_length}{a number denoting the height of the seedling in millimeters} @@ -22,7 +22,7 @@ A tibble with 359 rows and 11 variables } \source{ {Juice, S. and T. Fahey. 2019. Health and mycorrhizal colonization response of sugar maple (Acer saccharum) seedlings to calcium addition in Watershed 1 at the Hubbard Brook Experimental Forest ver 3. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/0ade53ede9a916a36962799b2407097e} +\doi{10.6073/pasta/0ade53ede9a916a36962799b2407097e} } \usage{ hbr_maples diff --git a/man/knz_bison.Rd b/man/knz_bison.Rd index be36c01..cadd18d 100644 --- a/man/knz_bison.Rd +++ b/man/knz_bison.Rd @@ -19,7 +19,7 @@ A tibble with 8,325 rows and 9 columns: } \source{ {EBlair, J. 2021. CBH01 Konza Prairie bison herd information ver 12. Environmental Data Initiative. https://doi.org/10.6073/pasta/9c641b35695abc5889edd64c3950517f (Accessed 2021-05-10).} -\url{https://portal.edirepository.org/nis/mapbrowse?packageid=knb-lter-knz.78.12} +\doi{10.6073/pasta/9c641b35695abc5889edd64c3950517f} } \usage{ knz_bison diff --git a/man/luq_streamchem.Rd b/man/luq_streamchem.Rd index 050acd0..48906aa 100644 --- a/man/luq_streamchem.Rd +++ b/man/luq_streamchem.Rd @@ -29,7 +29,7 @@ A tibble with 597 rows and 18 variables: } \source{ {McDowell, W. 2021. Chemistry of stream water from the Luquillo Mountains ver 4923056. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/0a09f5aa2e6f11451553c92b102279a6} +\doi{10.6073/pasta/0a09f5aa2e6f11451553c92b102279a6} } \usage{ luq_streamchem diff --git a/man/ntl_airtemp.Rd b/man/ntl_airtemp.Rd index 290b05d..deddaec 100644 --- a/man/ntl_airtemp.Rd +++ b/man/ntl_airtemp.Rd @@ -14,7 +14,7 @@ A tibble with 55151 rows and 3 variables } \source{ {Anderson, L. and D. Robertson. 2020. Madison Wisconsin Daily Meteorological Data 1869 - current ver 32. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/e3ff85971d817e9898bb8a83fb4c3a8b} +\doi{10.6073/pasta/e3ff85971d817e9898bb8a83fb4c3a8b} } \usage{ ntl_airtemp diff --git a/man/ntl_icecover.Rd b/man/ntl_icecover.Rd index f0b6ce4..8e838fd 100644 --- a/man/ntl_icecover.Rd +++ b/man/ntl_icecover.Rd @@ -16,7 +16,7 @@ A tibble with 431 rows and 5 variables } \source{ {Magnuson, J.J., S.R. Carpenter, and E.H. Stanley. 2021. North Temperate Lakes LTER: Ice Duration - Madison Lakes Area 1853 - current ver 35. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/ab31f2489ee436beb73fc8f1d0213d97} +\doi{10.6073/pasta/ab31f2489ee436beb73fc8f1d0213d97} } \usage{ ntl_icecover diff --git a/man/nwt_pikas.Rd b/man/nwt_pikas.Rd index e931de9..2e4199e 100644 --- a/man/nwt_pikas.Rd +++ b/man/nwt_pikas.Rd @@ -19,7 +19,7 @@ A tibble with 109 rows and 7 variables } \source{ {Whipple, A. and Niwot Ridge LTER. 2020. Physiological stress of American pika (Ochotona princeps) and associated habitat characteristics for Niwot Ridge, 2018 - 2019 ver 1. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/9f95baf55f98732f47a8844821ff690d} +\doi{10.6073/pasta/9f95baf55f98732f47a8844821ff690d} } \usage{ nwt_pikas diff --git a/man/pie_crab.Rd b/man/pie_crab.Rd index 64527a3..d01c1f1 100644 --- a/man/pie_crab.Rd +++ b/man/pie_crab.Rd @@ -20,7 +20,7 @@ A tibble with 392 rows and 9 variables: } \source{ {Johnson, D. 2019. Fiddler crab body size in salt marshes from Florida to Massachusetts, USA at PIE and VCR LTER and NOAA NERR sites during summer 2016. ver 1. Environmental Data Initiative.} -\url{https://doi.org/10.6073/pasta/4c27d2e778d3325d3830a5142e3839bb} +\doi{10.6073/pasta/4c27d2e778d3325d3830a5142e3839bb} } \usage{ pie_crab
Recommended data samples for introducing selected topicsRecommended data samples for introducing selected topics
Data sampleFor example you could:Data sampleFor example you could:
Linear relationships`pie_crab`Model the relationship between fiddler crab size and latitude using `pie_crab` , while learning about Bergmann's Rule!
`ntl_icecover`Investigate the relationship between winter temperatures and ice cover duration for Wisconsin lakes using `ntl_icecover`
`hbr_maples`Explore seedling height-mass relationships for sugar maples using `hbr_maples`
Non-linear relationships`knz_bison`Model the relationship between bison age and mass for male and female bison using `knz_bison`, for example estimating parameters in the Gompertz model
`and_vertebrates`Model the length-mass relationships for cutthroat trout and salamanders in Mack Creek, Oregon
Time series analysis`arc_weather`Explore seasonality, wrangling dates, or practice forecasting using daily meteorological records from Toolik Station, Alaska
`luq_streamchem`Investigate the impact of a hurricane on stream water chemistry
Spatial data introduction`nwt_pikas`Introduce basics of spatial data (e.g. CRS, projections) and tools for working with spatial data by visualizing pika locations at Niwot Ridge in the Colorado Rockies
Comparing groups`hbr_maples`Compare sugar maple seedling heights in previously calcium-treated versus untreated watersheds using `hbr_maples`, using the exercise as an opportunity to think about acid rain and soil acidification
`and_vertebrates`Explore differences in size and abundance of cutthroat trout and salamanders in old growth versus previously clear cut forest sections (2 groups) or in different conditions (> 2 groups, e.g. pool, cascade, riffle) of Mack Creek, Oregon
Linear relationships`pie_crab`Model the relationship between fiddler crab size and latitude using `pie_crab` , while learning about Bergmann's Rule!
`ntl_icecover`Investigate the relationship between winter temperatures and ice cover duration for Wisconsin lakes using `ntl_icecover`
`hbr_maples`Explore seedling height-mass relationships for sugar maples using `hbr_maples`
Non-linear relationships`knz_bison`Model the relationship between bison age and mass for male and female bison using `knz_bison`, for example estimating parameters in the Gompertz model
`and_vertebrates`Model the length-mass relationships for cutthroat trout and salamanders in Mack Creek, Oregon
Time series analysis`arc_weather`Explore seasonality, wrangling dates, or practice forecasting using daily meteorological records from Toolik Station, Alaska
`luq_streamchem`Investigate the impact of a hurricane on stream water chemistry
Spatial data introduction`nwt_pikas`Introduce basics of spatial data (e.g. CRS, projections) and tools for working with spatial data by visualizing pika locations at Niwot Ridge in the Colorado Rockies
Comparing groups`hbr_maples`Compare sugar maple seedling heights in previously calcium-treated versus untreated watersheds using `hbr_maples`, using the exercise as an opportunity to think about acid rain and soil acidification
`and_vertebrates`Explore differences in size and abundance of cutthroat trout and salamanders in old growth versus previously clear cut forest sections (2 groups) or in different conditions (> 2 groups, e.g. pool, cascade, riffle) of Mack Creek, Oregon