From 3759dba1db3f35ecbd676122d2dd6a0cb5142f95 Mon Sep 17 00:00:00 2001 From: Dominik Kopczynski Date: Fri, 23 Feb 2024 09:06:50 +0100 Subject: [PATCH 1/2] updated trivial list --- trivial_mediators.csv | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/trivial_mediators.csv b/trivial_mediators.csv index fb34cf4..47f8b71 100644 --- a/trivial_mediators.csv +++ b/trivial_mediators.csv @@ -1,22 +1,32 @@ 9S-HpODE 10,12 +9-HpODE 10,12 13-Oxo-ODE 9,11 9S-HOTrE 10,12,15 +9-HOTrE 10,12,15 13S-HpODE 9,11 13R-HODE 9,11 +13-HODE 9,11 9(10)-EpOME 12 12(13)-EpOME 9 13S-HOTrE 9,11,15 +13-HOTrE 9,11,15 12,13S-EOT 9,11,15 8R-HpOME 9 +8-HpOME 9 13R-HpOME 11 13S-HpOME 11 +13-HpOME 11 12R-HpOME 13 12S-HpOME 13 +12-HpOME 13 14R-HpOME 12 14S-HpOME 12 +14-HpOME 12 12R-HpOME 13 12S-HpOME 13 +12-HpOME 13 10R-HpOME 11 +10-HpOME 11 7-HpOME 5 8-HpOME 6 9-HpOME 7 @@ -24,33 +34,50 @@ 12-HpOME 10 10R-HOME 11 10S-HOME 11 +10-HOME 11 12R-HOME 13 12S-HOME 13 +12-HOME 13 11R-HOME 12 11S-HOME 12 +11-HOME 12 12R-HOME 10 12S-HOME 10 +12-HOME 10 12R-HOME 13 12S-HOME 13 +12-HOME 13 13R-HOME 11 13S-HOME 11 +13-HOME 11 11R-HOME 12 11S-HOME 12 +11-HOME 12 6-HpOME 7 13-HpOME 14 8R-HpODE 9,12 +8-HpODE 9,12 13S-HpOTrE 9,11,14 +13-HpOTrE 9,11,14 11S-HpODE 9,12 +11-HpODE 9,12 9-HODE 10,12 9S-HODE 10,12 12R-HODE 9,15 13R-HODE 9,11 +13-HODE 9,11 8R-HOME 9 +8-HOME 9 7S,8S-DiHODE 9,12 +7,8-DiHODE 9,12 7S,8S-DiHOME 9 +7,8-DiHOME 9 7S,8S-DiHOTrE 9,12,15 +7,8-DiHOTrE 9,12,15 8S-HODE 9,12 +8-HODE 9,12 13S-HODE 9,11 +13-HODE 9,11 9,10-DiHOME 12 12,13-DiHOME 9 9-OxoODE 10,12 @@ -75,6 +102,7 @@ 9-HETE 5,7,11,14 11-HETE 5,8,12,14 12-HETE 5,8,10,14 +12-HEPE 5,8,10,14,17 12(S)-HETE 5,8,10,14 12-HETE 5,8,10,14 15-HETE 5,8,11,13 From 93058c0c53af43484158666f7667e412533900dc Mon Sep 17 00:00:00 2001 From: Dominik Kopczynski Date: Fri, 23 Feb 2024 14:06:23 +0100 Subject: [PATCH 2/2] updated tri hydro information --- Goslin.g4 | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/Goslin.g4 b/Goslin.g4 index f4e8ee5..8357bf3 100644 --- a/Goslin.g4 +++ b/Goslin.g4 @@ -181,7 +181,7 @@ mediator_function_unknown_pos : mediator_functions; mediator_functions : mediator_mono_functions | mediator_di_functions | mediator_tri_functions; mediator_mono_functions: 'H' | 'Oxo' | 'oxo' | 'OXO' | 'keto' | 'Hp' | 'HP' | 'NO2' | 'K' | 'k' | 'hydroxy' | 'd' | 'deoxy' | 'beta'; mediator_di_functions: 'E' | 'Ep' | 'EP' | 'DH' | 'DiH' | 'diH' | 'dihydro'; -mediator_tri_functions : 'triH' | 'trihydroxy'; +mediator_tri_functions : 'TriH' | 'triH' | 'trihydroxy'; mediator_full_function : mediator_position_group '-' mediator_mono_functions | mediator_di_pos '-' mediator_di_functions | mediator_tri_pos '-' mediator_tri_functions | mediator_position_group mediator_mono_functions; mediator_db_function : mediator_double_bond_positions '-' mediator_mono_functions; mediator_double_bond_positions_full : '(' mediator_double_bond_positions ')'; @@ -189,11 +189,12 @@ mediator_double_bond_positions : mediator_double_bond_position | mediator_double mediator_double_bond_position : mediator_double_bond_pos mediator_double_bond_ct; mediator_double_bond_pos : number; mediator_double_bond_ct : cistrans; -mediator_di_pos: mediator_position_group mediator_separator mediator_position_group | mediator_position_group '(' mediator_position_group ')' | '(' mediator_position_group mediator_separator mediator_position_group ')' | mediator_position_group ',' mediator_position_group; +mediator_di_pos: mediator_position_group mediator_separator mediator_position_group | mediator_position_group '(' mediator_position_group ')' | '(' mediator_position_group mediator_separator mediator_position_group ')'; mediator_tri_pos: mediator_position_group mediator_separator mediator_position_group mediator_separator mediator_position_group | '(' mediator_position_group mediator_separator mediator_position_group mediator_separator mediator_position_group ')'; mediator_position_group : mediator_position | mediator_position mediator_position_isotope | mediator_position '(' mediator_position_isotope ')' | '(' mediator_position mediator_position_isotope ')'; mediator_position : number; mediator_position_isotope : 'S' | 'R'; +mediator_separator : ',' | '-' | '_'; trivial_mediator : 'AA' | 'ARA' | 'LA' | 'ALA' | 'DHA' | 'EPA' | 'Linoleic acid' | 'Arachidonic acid' | 'TXB1' | 'TXB2' | 'TXB3' | 'Resolvin D1' | 'Resolvin D2' | 'Resolvin D3' | 'Resolvin D5' | 'LTB4' | 'Mar1' | 'Maresin 1' | 'Palmitic acid' | 'PDX' | 'OA' | 'Oleic acid' | 'iPF2alpha-VI';