Computational analysis of gut microbiome and SCFA (acetate, butyrate, propionate) time series data
our_data: original and processed data generated by this project literature_data: published data in the literature (human gut microbiota responses under inulin intervention) codes: each folder correspondes to one main text figure and its associated supplementary figures figures: AI-editable figures created for the manuscript references: relevant papers
To run the codes, the following third-party packages/databases are required
- Cmdstan (https://mc-stan.org/users/interfaces/cmdstan) for inulin responder detection in Fig.4
- seqNMF (https://github.com/ContextLab/seqnmf) for factor analysis in Fig.3