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Value Error rised when running default-mapping-config #15

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TinaXiayanLi opened this issue Nov 1, 2023 · 0 comments
Open

Value Error rised when running default-mapping-config #15

TinaXiayanLi opened this issue Nov 1, 2023 · 0 comments

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@TinaXiayanLi
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Hi I am trying to get the Methylome and transcriptome data from GSE14049 in single cell level, however I am running yap default-mapping-config --barcode_version V1 --mode mct --bismark_ref ref/Bisulfite_Genome --genome_fasta ref/GRCh37.p13.genome.fa --star_ref ref/star_ref --gtf ref/gencode.v19.annotation.gtf I got the ValueError: chrom_size_path must be provided., even I specified the mode in for SnmCT-seq, how can I solve this issue?
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@TinaXiayanLi