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mark010.out
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Program MARK - Survival Rate Estimation with Capture-Recapture Data
gfortran(dble) Vers. 9.0 Mar 2018 27-Apr-2018 15:41:58 Page 001
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This version was compiled by GCC version 7.2.1 20170829 (Red Hat 7.2.1-1) using the options:
-cpp -D_REENTRANT -D IEEE -D DBLEPRECISION -m64 -mtune=generic -march=x86-64
-O2 -fimplicit-none -fbounds-check -funroll-loops -ftree-vectorize
-ffpe-summary=invalid,zero,overflow,underflow -fno-unsafe-math-optimizations
-frounding-math -fsignaling-nans -fopenmp.
This problem will use 3 of 4 possible threads.
INPUT --- proc title ;
CPU Time in seconds for last procedure was 0.00
INPUT --- proc chmatrix occasions= 2 groups= 1 etype= Brownie ICMeans
INPUT --- NoHist hist= 5 ;
INPUT --- time interval 1 1 ;
INPUT --- glabel(1)=Group 1;
Number of unique encounter histories read was 5.
Number of individual covariates read was 0.
Time interval lengths are all equal to 1.
Data type number is 10
Data type is Dead Recoveries (Brownie et al.)
CPU Time in seconds for last procedure was 0.00
Program MARK - Survival Rate Estimation with Capture-Recapture Data
gfortran(dble) Vers. 9.0 Mar 2018 27-Apr-2018 15:41:58 Page 002
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INPUT --- proc estimate link=Logit NOLOOP varest=2ndPart ;
INPUT --- model={ S(~1)f(~time) };
INPUT --- group=1 S rows=1 cols=1 Triang ;
INPUT --- 1 ;
INPUT --- group=1 f rows=2 cols=2 Triang ;
INPUT --- 2 3 ;
INPUT --- 3 ;
INPUT --- design matrix constraints=3 covariates=3;
INPUT --- 1 0 0;
INPUT --- 0 1 0;
INPUT --- 0 1 1;
INPUT --- blabel(1)=S:(Intercept);
INPUT --- blabel(2)=f:(Intercept);
INPUT --- blabel(3)=f:time2;
INPUT --- rlabel(1)=S g1 c1 a0 t1;
INPUT --- rlabel(2)=f g1 c1 a0 t1;
INPUT --- rlabel(3)=f g1 c1 a1 t2;
Link Function Used is LOGIT
Variance Estimation Procedure Used is 2ndPart
-2logL(saturated) = 19490.354
Effective Sample Size = 15459
Number of function evaluations was 23 for 3 parameters.
Time for numerical optimization was 0.01 seconds.
-2logL { S(~1)f(~time) } = 19490.354
Penalty { S(~1)f(~time) } = -0.0000000
Gradient { S(~1)f(~time) }:
0.2784477E-03 0.1934277E-03 0.3944604E-03
Maximum ABS(G) { S(~1)f(~time) } = 0.3944604E-03
S Vector { S(~1)f(~time) }:
4144.772 515.9364 213.6390
Time to compute number of parameters was 0.01 seconds.
Ratio Threshold = 50.00000 Max Gap (1/2) = 8.033495 Next Max Gap (1/2) = 8.033495
Gap Method for Num. of Estimated Parameters { S(~1)f(~time) } = 3
Threshold { S(~1)f(~time) } = 0.7889207E-003
Numerical Threshold Method for Num. of Estimated Parameters { S(~1)f(~time) } = 3
Number of Estimated Parameters { S(~1)f(~time) } = 3
DEVIANCE { S(~1)f(~time) } = 0.7275958E-011
DEVIANCE Degrees of Freedom { S(~1)f(~time) } = 0
c-hat { S(~1)f(~time) } = 1.0000000
AIC { S(~1)f(~time) } = 19496.354
AICc { S(~1)f(~time) } = 19496.355
BIC { S(~1)f(~time) } = 19519.292
Pearson Chisquare { S(~1)f(~time) } = 0.1280297E-010
Possible Encounter Histories { S(~1)f(~time) } = 5
Pearson Chisquare df { S(~1)f(~time) } = 0
Pearson chat { S(~1)f(~time) } = 1.0000000
Sum(Observed/Expected) { S(~1)f(~time) } = 4.9999999
Fletcher chat { S(~1)f(~time) } = 1.0000000
LOGIT Link Function Parameters of { S(~1)f(~time) }
95% Confidence Interval
Parameter Beta Standard Error Lower Upper
------------------------- -------------- -------------- -------------- --------------
1:S:(Intercept) -0.7535834 0.0665958 -0.8841112 -0.6230557
Program MARK - Survival Rate Estimation with Capture-Recapture Data
gfortran(dble) Vers. 9.0 Mar 2018 27-Apr-2018 15:41:58 Page 003
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2:f:(Intercept) -1.5243599 0.0274511 -1.5781641 -1.4705557
3:f:time2 0.2378462 0.0408866 0.1577083 0.3179840
Real Function Parameters of { S(~1)f(~time) }
95% Confidence Interval
Parameter Estimate Standard Error Lower Upper
-------------------------- -------------- -------------- -------------- --------------
1:S g1 c1 a0 t1 0.3200410 0.0144922 0.2923266 0.3490868
2:f g1 c1 a0 t1 0.1788204 0.0040310 0.1710556 0.1868582
3:f g1 c1 a1 t2 0.2164435 0.0051389 0.2065409 0.2266852
CPU Time in seconds for last procedure was 0.00
INPUT --- proc stop;
CPU Time in minutes for this job was 0.00
Time Start = 15:41:58.295 Time End = 15:41:58.297
Wall Clock Time in minutes for this job was 0.00
E X E C U T I O N S U C C E S S F U L